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BaseInfo

ncRNA ID novel_gma_miR9296
Species Glycine max
Class miRNA
Genome position Chr4:39838018-39838194 [-]
Reference genome Glycine_max_v2.0
Source SRR1451626
Length 21
Mature sequence(if miRNA) 157 - UGAGUCUCUGAUAUAUUAAAA - 177
Stem-loop(if miRNA) --      UC             A        CAA  CUCGA     ---                A        UC       CUUCCAA
  UGAGUC  UGAUAUAUUAAAA UUUUGUUU   GU     CUAUC   AGUUAAGUGAUGAUGU ACACCAUC  AACGACU       U
  ||||||  ||||||||||||| ||||||||   ||     |||||   |||||||||||||||| ||||||||  |||||||       A
  ACUCAG  ACUAUAUAAUUUU AAAACAAA   CA     GAUAG   UCAAUUUACUACUGUA UGUGGUAG  UUGCUGA       U
UG      GA             C        --A  -CAAG     CAA                C        GA       CUAUAUA
Stem-loop sequence UGAGUCUCUGAUAUAUUAAAAAUUUUGUUUCAAGUCUCGACUAUCAGUUAAGUGAUGAUGUAACACCAUCUCAACGACUCUUCCAAUAUAUAUAUCAGUCGUUAGGAUGGUGUCAUGUCAUCAUUUAACUAACGAUAGGAACACAAAACAAAACUUUUAAUAUAUCAAGGACUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006579057.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:111   UUUUAUUAUAACAGAGACUCA   131

2.5 PREDICTED: Glycine max uncharacterized LOC102666784 (LOC102666784), mRNA uncharacterized LOC102666784(LOC102666784) coding protein psRNATarget
XM_006588083.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:111   UUUUAUUAUAACAGAGACUCA   131

2.5 PREDICTED: Glycine max uncharacterized LOC102662924 (LOC102662924), mRNA uncharacterized LOC102662924(LOC102662924) coding protein psRNATarget
XM_006598554.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:111   UUUUAUUAUAACAGAGACUCA   131

2.5 PREDICTED: Glycine max uncharacterized LOC102669519 (LOC102669519), mRNA uncharacterized LOC102669519(LOC102669519) coding protein psRNATarget
XM_006605047.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:111   UUUUAUUAUAACAGAGACUCA   131

2.5 PREDICTED: Glycine max uncharacterized LOC102666382 (LOC102666382), mRNA uncharacterized LOC102666382(LOC102666382) coding protein psRNATarget
XM_014771488.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:519   UUUUAUUAUAACAGAGACUCA   539

2.5 PREDICTED: Glycine max uncharacterized LOC106797241 (LOC106797241), mRNA uncharacterized LOC106797241(LOC106797241) coding protein psRNATarget
XM_014764198.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:476   UUUUAUUAUAACAGAGACUCA   496

2.5 PREDICTED: Glycine max uncharacterized LOC106794204 (LOC106794204), transcript variant X1, mRNA uncharacterized LOC106794204(LOC106794204) coding protein psRNATarget
XM_014774049.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:1700   UUUUAUUAUAACAGAGACUCA   1720

2.5 PREDICTED: Glycine max uncharacterized LOC106798121 (LOC106798121), mRNA uncharacterized LOC106798121(LOC106798121) coding protein psRNATarget
XM_014762093.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:2390   UUUUAUUAUAACAGAGACUCA   2410

2.5 PREDICTED: Glycine max uncharacterized LOC106794574 (LOC106794574), mRNA uncharacterized LOC106794574(LOC106794574) coding protein psRNATarget
XM_014774577.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:2439   UUUUAUUAUAACAGAGACUCA   2459

2.5 PREDICTED: Glycine max uncharacterized LOC106798386 (LOC106798386), mRNA uncharacterized LOC106798386(LOC106798386) coding protein psRNATarget
XM_014764168.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:2698   UUUUAUUAUAACAGAGACUCA   2718

2.5 PREDICTED: Glycine max uncharacterized LOC106795202 (LOC106795202), mRNA uncharacterized LOC106795202(LOC106795202) coding protein psRNATarget
XM_014776847.1
ncRNA:21   AAAAUUAUAUAGUCUCUGAGU   1
  |||||*||||*||||||||||
targets:2716   UUUUAUUAUAACAGAGACUCA   2736

2.5 PREDICTED: Glycine max uncharacterized LOC106798992 (LOC106798992), transcript variant X3, mRNA uncharacterized LOC106798992(LOC106798992) coding protein psRNATarget
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