ncRNA ID | novel_gma_miR9262 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr4:16543579-16543778 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451625 |
Length | 24 |
Mature sequence(if miRNA) | 177 - UUUCAAAAAACCGAUGUUAACUGU - 200 |
Stem-loop(if miRNA) |
-----UUU  A               U  CAACA    CACAU  -               CUGUA               -     G              U         CA AAAACCGAUGUUAAC GU     UUAA     AC GUUAACAUCGGUUUU     AAAAACCGAUGUUAA GUAAC UUAACAUCGGUUUU C         || ||||||||||||||| ||     ||||     || |||||||||||||||     ||||||||||||||| ||||| |||||||||||||| C         GU UUUUGGCUACAAUUG CA     AAUU     UG CAAUUGUAGCCAAAA     UUUUUGGCUACAAUU CAUUG AAUUGUAGCUAAAA A AAAAAAAU  C               -  UACAC    ACAAC  U               AAACC               G     -              A |
Stem-loop sequence | UUUCAAAAAACCGAUGUUAACUGUCAACAUUAACACAUACGUUAACAUCGGUUUUCUGUAAAAAACCGAUGUUAAGUAACGUUAACAUCGGUUUUUCCAAAAAAUCGAUGUUAAGUUACGUUAACAUCGGUUUUUCCAAAAAAACCGAUGUUAACUGUCAACAUUAACACAUACGUUAACAUCGGUUUUCUGUAAAAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JB171004.1 |
|
1.5 | Sequence 8668 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
JB171004.1 |
|
1.5 | Sequence 8668 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ242673.1 |
|
1.5 | Sequence 8668 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
LQ242673.1 |
|
1.5 | Sequence 8668 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
HI410543.1 |
|
1.5 | Sequence 8668 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
HI410543.1 |
|
1.5 | Sequence 8668 from Patent EP2074227 | NA | coding protein | psRNATarget |