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BaseInfo

ncRNA ID novel_gma_miR9241
Species Glycine max
Class miRNA
Genome position Chr6:12850723-12850801 [+]
Reference genome Glycine_max_v2.0
Source SRR1451624
Length 21
Mature sequence(if miRNA) 59 - AUAUUCACCCAAUAAUAGAGG - 79
Stem-loop(if miRNA) --              C   C    U    A    ACUU
  UUUAUUAUUGGGUG AUA UUUU AAGA AUUC    G
  |||||||||||||| ||| |||| |||| ||||    A
  AGAUAAUAACCCAC UAU AGGA UUCU UAAG    U
GG              U   A    U    G    AUAA
Stem-loop sequence UUUAUUAUUGGGUGCAUACUUUUUAAGAAAUUCACUUGAUAAUAGAAUGUCUUUAGGAAUAUUCACCCAAUAAUAGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317631.1
ncRNA:21   GGAGAUAAUAACCCACUUAUA   1
  ==|||||||||||||||||*|
targets:991   UUUCUAUUAUUGGGUGAAUCU   1011

1.5 Glycine max transcription factor bHLH30-like (LOC100818879), mRNA transcription factor bHLH30-like(LOC100818879) coding protein psRNATarget
BT097700.1
ncRNA:21   GGAGAUAAUAACCCACUUAUA   1
  ==|||||||||||||||||*|
targets:992   UUUCUAUUAUUGGGUGAAUCU   1012

1.5 Soybean clone JCVI-FLGm-26I4 unknown mRNA NA coding protein psRNATarget
XM_003529320.3
ncRNA:21   GGAGAUAAUAACCCACUUAUA   1
  ==|||||||||||||||||*|
targets:1556   UUUCUAUUAUUGGGUGAAUCU   1576

1.5 PREDICTED: Glycine max transcription factor bHLH30-like (LOC100804756), mRNA transcription factor bHLH30-like(LOC100804756) coding protein psRNATarget
AK244177.1
ncRNA:21   GGAGAUAAUAACCCACUUAUA   1
  ==|||||||||||||||||*|
targets:1597   UUUCUAUUAUUGGGUGAAUCU   1617

1.5 Glycine max cDNA, clone: GMFL01-02-E20 NA coding protein psRNATarget