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BaseInfo

ncRNA ID novel_gma_miR9223
Species Glycine max
Class miRNA
Genome position Chr13:40083964-40084172 [+]
Reference genome Glycine_max_v2.0
Source SRR1451624
Length 21
Mature sequence(if miRNA) 1 - UGUUCUUCCAGAAAAACCUUC - 21
Stem-loop(if miRNA) --      U  A   A                  C             -           A        A   U           -----------         G    A
  UGUUCU CC GAA AACCUUCUUCCAGAGAAG UUACUGGAAGAAG UUCUUCCAGAU AACAAUUU UUC UCCGGAAGAAC           AAAGUUACC GAAG A
  |||||| || ||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||||||||||           ||||||||| |||| G
  ACAAGA GG CUU UUGGAAGAAGGUUUCUUC AAUGACCUUCUUC AAGAAGGUCUA UUGUUAAA AAG AGGCUUUUUUG           UUUCAAUGG CUUC U
AA      U  -   C                  -             C           C        C   U           AAACCACGUUU         A    U
Stem-loop sequence UGUUCUUCCAGAAAAACCUUCUUCCAGAGAAGCUUACUGGAAGAAGUUCUUCCAGAUAAACAAUUUAUUCUUCCGGAAGAACAAAGUUACCGGAAGAAGUUCUUCAGGUAACUUUUUUGCACCAAAGUUUUUUCGGAUGAACAAAUUGUUCAUCUGGAAGAACCUUCUUCCAGUAACUUCUUUGGAAGAAGGUUCUUCGGUAGAACAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT089515.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  **||||*|||||||||||||*
targets:86   UCAGGUGUUUCUGGAAGAACU   106

2.0 Soybean clone JCVI-FLGm-17C12 unknown mRNA NA coding protein psRNATarget
NM_001249174.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  **||||*|||||||||||||*
targets:86   UCAGGUGUUUCUGGAAGAACU   106

2.0 Glycine max uncharacterized LOC100305743 (LOC100305743), mRNA uncharacterized LOC100305743(LOC100305743) coding protein psRNATarget
XM_006593278.2
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  **||||*|||||||||||||*
targets:128   UCAGGUGUUUCUGGAAGAACU   148

2.0 PREDICTED: Glycine max uncharacterized LOC100305743 (LOC100305743), transcript variant X2, mRNA uncharacterized LOC100305743(LOC100305743) coding protein psRNATarget
XM_006593277.2
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  **||||*|||||||||||||*
targets:182   UCAGGUGUUUCUGGAAGAACU   202

2.0 PREDICTED: Glycine max uncharacterized LOC100305743 (LOC100305743), transcript variant X1, mRNA uncharacterized LOC100305743(LOC100305743) coding protein psRNATarget
XM_003536974.3
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  **||||*|||||||||||||*
targets:185   UCAGGUGUUUCUGGAAGAACU   205

2.0 PREDICTED: Glycine max rho-N domain-containing protein 1, chloroplastic-like (LOC100795108), mRNA rho-N domain-containing protein 1, chloroplastic-like(LOC100795108) coding protein psRNATarget
XM_014763802.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X6, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_006590511.2
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X5, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_014763803.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X7, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_006590510.2
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X4, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_006590509.2
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1433   AGAGGUUUGUCUGGAAGAACU   1453

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X3, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_014763801.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X2, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
XM_003538698.3
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||||*|||||||||||*
targets:1541   AGAGGUUUGUCUGGAAGAACU   1561

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH4 (LOC100815919), transcript variant X1, mRNA DNA mismatch repair protein MSH4(LOC100815919) coding protein psRNATarget
BT095794.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *|||||*||||*|||||||||
targets:392   UAAGGUCUUUCCGGAAGAACA   412

2.5 Soybean clone JCVI-FLGm-19L8 unknown mRNA NA coding protein psRNATarget
NM_001254670.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *|||||*||||*|||||||||
targets:392   UAAGGUCUUUCCGGAAGAACA   412

2.5 Glycine max auxin-induced protein AUX28-like (LOC100803065), mRNA auxin-induced protein AUX28-like(LOC100803065) coding protein psRNATarget
AK244410.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *|||||*||||*|||||||||
targets:472   UAAGGUCUUUCCGGAAGAACA   492

2.5 Glycine max cDNA, clone: GMFL01-02-O24 NA coding protein psRNATarget
AK287108.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||*||||*|||||||||
targets:414   UGAGGUCUUUCCGGAAGAACA   434

2.5 Glycine max cDNA, clone: GMFL01-44-E19 NA coding protein psRNATarget
NM_001317623.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||*||||*|||||||||
targets:451   UGAGGUCUUUCCGGAAGAACA   471

2.5 Glycine max auxin-induced protein AUX28-like (LOC100780214), mRNA auxin-induced protein AUX28-like(LOC100780214) coding protein psRNATarget
BT094070.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||*||||*|||||||||
targets:451   UGAGGUCUUUCCGGAAGAACA   471

2.5 Soybean clone JCVI-FLGm-14M24 unknown mRNA NA coding protein psRNATarget
XM_014767151.1
ncRNA:21   CUUCCAAAAAGACCUUCUUGU   1
  *=||||*||||*|||||||||
targets:526   UGAGGUCUUUCCGGAAGAACA   546

2.5 PREDICTED: Glycine max auxin-induced protein AUX28-like (LOC100780214), mRNA auxin-induced protein AUX28-like(LOC100780214) coding protein psRNATarget
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