Search result

BaseInfo

ncRNA ID	novel_gma_miR9215
Species	Glycine max
Class	miRNA
Genome position	Chr7:33946594-33946772 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451623
Length	24
Mature sequence(if miRNA)	156 - UGCACUAGAACGAUCAACACCAAU - 179
Stem-loop(if miRNA)	--UG        C     A               C      G                     C     A          -              CACUAGAA GAUCA CACCAAUCUGUGCUU UUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUUUGUUUU GUAAAUUACA     |||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||G     GUGAUCUU UUAGU GUGGUUAGGCACGAA AAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GGAAACGAAA CAUUUGAUGU CAGA        C     C               C      G                     C     -          A
Stem-loop sequence	UGCACUAGAACGAUCAACACCAAUCUGUGCUUCUUCCUCGUCUACCAGCUCAAUAUCUUUCCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUGGUAGAGGAGGAACAAGCACGGAUUGGUGCUGAUUCUUCUAGUGAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006586135.2	ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1   |||||||*||||=||||||||||| targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855 Target Full Sequence	2.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1   |||||||*||||=||||||||||| targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855 Target Full Sequence	2.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014769804.1	ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1   |*||*|||||*|||*||||||||| targets:609   ACUGUUGUUGCUCGAUCUAGUGCA   632 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106796765), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC106796765)	coding protein	psRNATarget
XM_014775096.1	ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1   |*||*|||||*|||*||||||||| targets:402   ACUGUUGUUGCUCGAUCUAGUGCA   425 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106798501), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC106798501)	coding protein	psRNATarget
XM_014767922.1	ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1   =*||*|||||*|||*||||||||| targets:4459   GAUGUUGUUGCUCGAUCUAGUGCA   4482 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796283 (LOC106796283), mRNA	uncharacterized LOC106796283(LOC106796283)	coding protein	psRNATarget