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BaseInfo

ncRNA ID novel_gma_miR9207
Species Glycine max
Class miRNA
Genome position Chr10:16291912-16292090 [+]
Reference genome Glycine_max_v2.0
Source SRR1451623
Length 24
Mature sequence(if miRNA) 1 - UGCACUAGAACGAUCAACACCAAU - 24
Stem-loop(if miRNA) --UG        C     A               C      G    A                C     A   G      -         
    CACUAGAA GAUCA CACCAAUCUGUGCUU UUCCUU UCUA CAGCUCAAUAUCUUUC UUUCA CUU UGUUUU GUAAAUUACA
    |||||||| ||||| ||||||||||||||| |||||| |||| |||||||||||||||| ||||| ||| |||||| |||||||||G
    GUGAUCUU UUAGU GUGGUUAGGCACGGA GAGGAG AGAU GUCGAGUUAUAGAAAG AAAGU GGA ACGAAA CAUUUGAUGU
CAGA        C     C               C      G    G                C     -   A      A         
Stem-loop sequence UGCACUAGAACGAUCAACACCAAUCUGUGCUUCUUCCUUGUCUAACAGCUCAAUAUCUUUCCUUUCAACUUGUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUGGUAGAGGAGGAGCAGGCACGGAUUGGUGCUGAUUCUUCUAGUGAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006586135.2
ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1
  |||||||*||||=|||||||||||
targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855

2.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_014779469.1
ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1
  |||||||*||||=|||||||||||
targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855

2.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_014769804.1
ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1
  |*||*|||||*|||*|||||||||
targets:609   ACUGUUGUUGCUCGAUCUAGUGCA   632

2.5 PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106796765), mRNA uncharacterized mitochondrial protein AtMg00810-like(LOC106796765) coding protein psRNATarget
XM_014775096.1
ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1
  |*||*|||||*|||*|||||||||
targets:402   ACUGUUGUUGCUCGAUCUAGUGCA   425

2.5 PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106798501), mRNA uncharacterized mitochondrial protein AtMg00810-like(LOC106798501) coding protein psRNATarget
XM_014767922.1
ncRNA:24   UAACCACAACUAGCAAGAUCACGU   1
  =*||*|||||*|||*|||||||||
targets:4459   GAUGUUGUUGCUCGAUCUAGUGCA   4482

2.5 PREDICTED: Glycine max uncharacterized LOC106796283 (LOC106796283), mRNA uncharacterized LOC106796283(LOC106796283) coding protein psRNATarget