Search result

BaseInfo

ncRNA ID novel_gma_miR9184
Species Glycine max
Class miRNA
Genome position Chr14:19107950-19108143 [-]
Reference genome Glycine_max_v2.0
Source SRR1451623
Length 21
Mature sequence(if miRNA) 1 - CUUCCAGGAUCAAUGACUGAC - 21
Stem-loop(if miRNA) --UAA                CA  -AG  A  -   GUU     --CUCAAC    CUC  A    -------------A  ACUUCACGCGGUGGCAUUUCACUC
     UCAUUGAUCCUGGAAG  GG   AA UG UUU   AGGUU        GGCU   AC CUAC              GC                        A
     ||||||||||||||||  ||   || || |||   |||||        ||||   || ||||              ||                        A
     AGUAACUAGGACCUUC  CC   UU AC AAA   UCCAG        CCGA   UG GAUG              CC                        C
CAGUC                AC  GUA  A  U   AAC     AACCUUUC    ---  -    CCUCUCAAGACUGA  ACCUCCCAAAACUGGUUGUUCCUA
Stem-loop sequence UAAUCAUUGAUCCUGGAAGCAGGAGAAAUGUUUGUUAGGUUCUCAACGGCUCUCACACUACAGCACUUCACGCGGUGGCAUUUCACUCAACAUCCUUGUUGGUCAAAACCCUCCACCAGUCAGAACUCUCCGUAGGUAGCCCUUUCCAAGACCUCAAAAAUCAAUUAUGCCCACUUCCAGGAUCAAUGACUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006596649.1
ncRNA:21   CAGUCAGUAACUAGGACCUUC   1
  ***|||||||||*||||||||
targets:243   CAAAGUCAUUGACCCUGGAAG   263

2.5 PREDICTED: Glycine max uncharacterized LOC100820424 (LOC100820424), mRNA uncharacterized LOC100820424(LOC100820424) coding protein psRNATarget
BT091775.1
ncRNA:21   CAGUCAGUAACUAGGACCUUC   1
  *|||*|==|||||||||||||
targets:226   UUCAUUUGUUGAUCCUGGAAG   246

3.0 Soybean clone JCVI-FLGm-8F2 unknown mRNA NA coding protein psRNATarget
NM_001249711.1
ncRNA:21   CAGUCAGUAACUAGGACCUUC   1
  *|||*|==|||||||||||||
targets:226   UUCAUUUGUUGAUCCUGGAAG   246

3.0 Glycine max uncharacterized LOC100526969 (LOC100526969), mRNA uncharacterized LOC100526969(LOC100526969) coding protein psRNATarget
NM_001254138.2
ncRNA:21   CAGUCAGUAACUAGGACCUUC   1
  *|||*|==|||||||||||||
targets:475   UUCAUUUGUUGAUCCUGGAAG   495

3.0 Glycine max uncharacterized LOC100786585 (LOC100786585), mRNA uncharacterized LOC100786585(LOC100786585) coding protein psRNATarget
BT096129.1
ncRNA:21   CAGUCAGUAACUAGGACCUUC   1
  *|||*|==|||||||||||||
targets:477   UUCAUUUGUUGAUCCUGGAAG   497

3.0 Soybean clone JCVI-FLGm-20M2 unknown mRNA NA coding protein psRNATarget