Search result

BaseInfo

ncRNA ID novel_gma_miR9183
Species Glycine max
Class miRNA
Genome position Chr2:23639626-23639678 [-]
Reference genome Glycine_max_v2.0
Source SRR1294477
Length 24
Mature sequence(if miRNA) 1 - GGGGAAAGAGGGUAGAGUAAUUUC - 24
Stem-loop(if miRNA) --AACC  -  C              U
      AC CU CCUUUUUUCCCCUA A
      || || ||||||||||||||
      UG GA GGGAGAAAGGGGAU A
CUUUAA  A  U              A
Stem-loop sequence AACCACCUCCCUUUUUUCCCCUAUAAAUAGGGGAAAGAGGGUAGAGUAAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539689.3
ncRNA:24   CUUUAAUGAGAUGGGAGAAAGGGG   1
  *|**||=||||||||||||||||=
targets:208   CACUUUGCUCUACCCUCUUUCCCU   231

2.0 PREDICTED: Glycine max dof zinc finger protein DOF2.1-like (LOC100799737), mRNA dof zinc finger protein DOF2.1-like(LOC100799737) coding protein psRNATarget
XM_006584797.2
ncRNA:24   CUUUAAUGAGAUGGGAGAAAGGGG   1
  *=|*|||=||*||||||||||||=
targets:590   UGAUUUAUUCGACCCUCUUUCCCU   613

3.0 PREDICTED: Glycine max chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like (LOC100776626), transcript variant X3, mRNA chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like(LOC100776626) coding protein psRNATarget
XM_014778688.1
ncRNA:24   CUUUAAUGAGAUGGGAGAAAGGGG   1
  *=|*|||=||*||||||||||||=
targets:590   UGAUUUAUUCGACCCUCUUUCCCU   613

3.0 PREDICTED: Glycine max chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like (LOC100776626), transcript variant X4, mRNA chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like(LOC100776626) coding protein psRNATarget
XM_006584796.2
ncRNA:24   CUUUAAUGAGAUGGGAGAAAGGGG   1
  *=|*|||=||*||||||||||||=
targets:589   UGAUUUAUUCGACCCUCUUUCCCU   612

3.0 PREDICTED: Glycine max chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like (LOC100776626), transcript variant X1, mRNA chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like(LOC100776626) coding protein psRNATarget
XM_003532456.3
ncRNA:24   CUUUAAUGAGAUGGGAGAAAGGGG   1
  *=|*|||=||*||||||||||||=
targets:589   UGAUUUAUUCGACCCUCUUUCCCU   612

3.0 PREDICTED: Glycine max chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like (LOC100776626), transcript variant X2, mRNA chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like(LOC100776626) coding protein psRNATarget