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BaseInfo

ncRNA ID novel_gma_miR9177
Species Glycine max
Class miRNA
Genome position Chr8:11645355-11645446 [+]
Reference genome Glycine_max_v2.0
Source SRR1451622
Length 24
Mature sequence(if miRNA) 1 - AUCCUCACCAUUCAUUUUCUUGAA - 24
Stem-loop(if miRNA) --   C    CA                    C    --AAA    A
  AUC UCAC  UUCAUUUUCUUGAAAUUUAA GGUU     GAUU G
  ||| ||||  |||||||||||||||||||| ||||     ||||
  UAG AGUG  AAGUAAAAGAACUUUAGAUU CCAA     UUGA U
AG   A    UG                    A    GAUUG    U
Stem-loop sequence AUCCUCACCAUUCAUUUUCUUGAAAUUUAACGGUUAAAGAUUAGUUAGUUGUUAGAACCAUUAGAUUUCAAGAAAAUGAAGUGUGAAGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003551240.3
ncRNA:24   AAGUUCUUUUACUUACCACUCCUA   1
  ||=|*|*||||||||||||*||||
targets:1004   UUUAUGUAAAUGAAUGGUGCGGAU   1027

2.5 PREDICTED: Glycine max REF/SRPP-like protein At1g67360 (LOC100816931), transcript variant X2, mRNA REF/SRPP-like protein At1g67360(LOC100816931) coding protein psRNATarget
AK245464.1
ncRNA:24   AAGUUCUUUUACUUACCACUCCUA   1
  ||=|*|*||||||||||||*||||
targets:995   UUUAUGUAAAUGAAUGGUGCGGAU   1018

2.5 Glycine max cDNA, clone: GMFL01-31-D03 NA coding protein psRNATarget
XM_014770902.1
ncRNA:24   AAGUUCUUUUACUUACCACUCCUA   1
  ||=|*|*||||||||||||*||||
targets:1025   UUUAUGUAAAUGAAUGGUGCGGAU   1048

2.5 PREDICTED: Glycine max REF/SRPP-like protein At1g67360 (LOC100816931), transcript variant X1, mRNA REF/SRPP-like protein At1g67360(LOC100816931) coding protein psRNATarget