ncRNA ID | ath-miR861-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:17838135-17838266 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 89 - CCUUGGAGAAAUAUGCGUCAA - 109 |
Stem-loop(if miRNA) |
            UC   C  U           A    G     AU      CG    -  UG   A GUAUCAUUGUUU  GAA GA GUCCUUGGAGA AUAU CGUCA  GGAGUC  UCUU CU  AGA G ||||||||||||  ||| || ||||||||||| |||| |||||  ||||||  |||| ||  ||| C CAUGGUAACAAA  CUU CU CAGGAACUUCU UAUA GUAGU  UCUUAG  AGAG GA  UUU A             --   U  U           G    G     AC      UA    U  GU   U |
Stem-loop sequence | GUAUCAUUGUUUUCGAACGAUGUCCUUGGAGAAAUAUGCGUCAAUGGAGUCCGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUGAUUCUCAUGAUGGAUAUGUCUUCAAGGACUUCUUUCAAACAAUGGUAC |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |