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BaseInfo

ncRNA ID ath-miR861-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:17838135-17838266 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 89 - CCUUGGAGAAAUAUGCGUCAA - 109
Stem-loop(if miRNA)             UC   C  U           A    G     AU      CG    -  UG   A
GUAUCAUUGUUU  GAA GA GUCCUUGGAGA AUAU CGUCA  GGAGUC  UCUU CU  AGA G
||||||||||||  ||| || ||||||||||| |||| |||||  ||||||  |||| ||  ||| C
CAUGGUAACAAA  CUU CU CAGGAACUUCU UAUA GUAGU  UCUUAG  AGAG GA  UUU A
            --   U  U           G    G     AC      UA    U  GU   U
Stem-loop sequence GUAUCAUUGUUUUCGAACGAUGUCCUUGGAGAAAUAUGCGUCAAUGGAGUCCGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUGAUUCUCAUGAUGGAUAUGUCUUCAAGGACUUCUUUCAAACAAUGGUAC

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
2 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).