Search result

BaseInfo

ncRNA ID novel_gma_miR9152
Species Glycine max
Class miRNA
Genome position Chr19:2846268-2846319 [-]
Reference genome Glycine_max_v2.0
Source SRR1294477
Length 24
Mature sequence(if miRNA) 29 - UGUGAGACAAAGAGGGUGGCAGGG - 52
Stem-loop(if miRNA) --    AG  --A       UG C  G
  UGUG  AC   AAGAGGG  G AG G
  ||||  ||   |||||||  | || U
  ACAC  UG   UUCUCCC  U UC U
CC    CU  ACC       GU -  A
Stem-loop sequence UGUGAGACAAAGAGGGUGGCAGGGUUACUUUGCCCUCUUCCAGUUCCACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001248785.2
ncRNA:24   GGGACGGUGGGAGAAACAGAGUGU   1
  |=||*||*||||||||*|||||||
targets:40   CUCUCCCCCCCUCUUUCUCUCACA   63

2.5 Glycine max uncharacterized LOC100306229 (LOC100306229), mRNA uncharacterized LOC100306229(LOC100306229) coding protein psRNATarget
BT090244.1
ncRNA:24   GGGACGGUGGGAGAAACAGAGUGU   1
  |=||*||*||||||||*|||||||
targets:42   CUCUCCCCCCCUCUUUCUCUCACA   65

2.5 Soybean clone JCVI-FLGm-4A21 unknown mRNA NA coding protein psRNATarget
XM_006580863.2
ncRNA:24   GGGACGGUGGGAGAAACAGAGUGU   1
  |=||*||*||||||||*|||||||
targets:53   CUCUCCCCCCCUCUUUCUCUCACA   76

2.5 PREDICTED: Glycine max uncharacterized LOC100306229 (LOC100306229), transcript variant X1, mRNA uncharacterized LOC100306229(LOC100306229) coding protein psRNATarget