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BaseInfo

ncRNA ID novel_gma_miR9107
Species Glycine max
Class miRNA
Genome position Chr13:171179-171234 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 1 - UUUUUAAGAAAUUUGUGGCCUGUU - 24
Stem-loop(if miRNA) --      A   -A    UG  -   UUA
  UUUUUA GAA  UUUG  GC CUG   A
  |||||| |||  ||||  || |||
  AAGAAU CUU  AAGC  UG GAU   U
GU      G   GA    GU  A   GUU
Stem-loop sequence UUUUUAAGAAAUUUGUGGCCUGUUAAUUUGUAGAGUUGCGAAAGUUCGUAAGAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585625.2
ncRNA:24   UUGUCCGGUGUUUAAAGAAUUUUU   1
  ||=|||=|||||||||||||*|||
targets:5684   AAUAGGUCACAAAUUUCUUACAAA   5707

2.5 PREDICTED: Glycine max histone acetyltransferase HAC1-like (LOC100787114), transcript variant X2, mRNA histone acetyltransferase HAC1-like(LOC100787114) coding protein psRNATarget
XM_006585624.2
ncRNA:24   UUGUCCGGUGUUUAAAGAAUUUUU   1
  ||=|||=|||||||||||||*|||
targets:5846   AAUAGGUCACAAAUUUCUUACAAA   5869

2.5 PREDICTED: Glycine max histone acetyltransferase HAC1-like (LOC100787114), transcript variant X1, mRNA histone acetyltransferase HAC1-like(LOC100787114) coding protein psRNATarget