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BaseInfo

ncRNA ID novel_gma_miR9100
Species Glycine max
Class miRNA
Genome position Chr1:34693693-34693871 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 23
Mature sequence(if miRNA) 157 - CAAAUUGAAUCGAUUUUAAAAAU - 179
Stem-loop(if miRNA) --                    A  -   A               CA   A     -AAAAAUC  AC      A         A    CA
  UUUUAAAAUCGAUUCGAUUU GU CCU UUGUCUAAGUUGGAC  ACA UGUUA        AC  UUUGUG UAGUUUAAA UCAC  C
  |||||||||||||||||||| || ||| |||||||||||||||  ||| |||||        ||  |||||| ||||||||| ||||
  AAAAUUUUAGCUAAGUUAAA UA GGA GGCAGAUUUAAUUUG  UGU AUAAU        UG  AAACAU AUCAGAUUU AGUG  U
UA                    C  U   -               AC   G     CCUGUACA  CA      C         C    AA
Stem-loop sequence UUUUAAAAUCGAUUCGAUUUAGUCCUAUUGUCUAAGUUGGACCAACAAUGUUAAAAAAUCACACUUUGUGAUAGUUUAAAAUCACCACUAAGUGACUUUAGACUACUACAAAACGUACAUGUCCUAAUAGUGUCAGUUUAAUUUAGACGGAGGUAUCAAAUUGAAUCGAUUUUAAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003546871.3
ncRNA:23   UAAAAAUUUUAGCUAAGUUAAAC   1
  ||||||*|||||*||||||||||
targets:1699   AUUUUUUAAAUCAAUUCAAUUUG   1721

2.5 PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100811188), transcript variant X2, mRNA probable receptor-like protein kinase At1g80640(LOC100811188) coding protein psRNATarget
XM_006597044.2
ncRNA:23   UAAAAAUUUUAGCUAAGUUAAAC   1
  ||||||*|||||*||||||||||
targets:1722   AUUUUUUAAAUCAAUUCAAUUUG   1744

2.5 PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100811188), transcript variant X1, mRNA probable receptor-like protein kinase At1g80640(LOC100811188) coding protein psRNATarget