ncRNA ID | novel_gma_miR9100 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr1:34693693-34693871 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451621 |
Length | 23 |
Mature sequence(if miRNA) | 157 - CAAAUUGAAUCGAUUUUAAAAAU - 179 |
Stem-loop(if miRNA) |
--                    A  -   A               CA   A     -AAAAAUC  AC      A         A    CA   UUUUAAAAUCGAUUCGAUUU GU CCU UUGUCUAAGUUGGAC  ACA UGUUA        AC  UUUGUG UAGUUUAAA UCAC  C   |||||||||||||||||||| || ||| |||||||||||||||  ||| |||||        ||  |||||| ||||||||| ||||   AAAAUUUUAGCUAAGUUAAA UA GGA GGCAGAUUUAAUUUG  UGU AUAAU        UG  AAACAU AUCAGAUUU AGUG  U UA                    C  U   -               AC   G     CCUGUACA  CA      C         C    AA |
Stem-loop sequence | UUUUAAAAUCGAUUCGAUUUAGUCCUAUUGUCUAAGUUGGACCAACAAUGUUAAAAAAUCACACUUUGUGAUAGUUUAAAAUCACCACUAAGUGACUUUAGACUACUACAAAACGUACAUGUCCUAAUAGUGUCAGUUUAAUUUAGACGGAGGUAUCAAAUUGAAUCGAUUUUAAAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003546871.3 |
|
2.5 | PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100811188), transcript variant X2, mRNA | probable receptor-like protein kinase At1g80640(LOC100811188) | coding protein | psRNATarget | |||||||||
XM_006597044.2 |
|
2.5 | PREDICTED: Glycine max probable receptor-like protein kinase At1g80640 (LOC100811188), transcript variant X1, mRNA | probable receptor-like protein kinase At1g80640(LOC100811188) | coding protein | psRNATarget |