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BaseInfo

ncRNA ID novel_gma_miR9080
Species Glycine max
Class miRNA
Genome position Chr18:52603860-52603922 [-]
Reference genome Glycine_max_v2.0
Source SRR1294477
Length 24
Mature sequence(if miRNA) 1 - ACCCGACCCGACCCUUCCCGUUGC - 24
Stem-loop(if miRNA) --        --      GG    G G    AA
  AAUGGGGA  GUCGGG  CGGG U GGGU  A
  ||||||||  ||||||  |||| | ||||  C
  UUGCCCUU  CAGCCC  GCCC A CCCA  A
CG        CC      -A    - G    AA
Stem-loop sequence AAUGGGGAGUCGGGGGCGGGGUGGGGUAAACAAAACCCGACCCGACCCGACCCUUCCCGUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014777134.1
ncRNA:24   CGUU--GCCCUUCCCAGCCCAGCCCA   1
  *|=|--||||**||||||||||||||
targets:176   UCGAGUCGGGUCGGGUCGGGUCGGGU   201

2.0 PREDICTED: Glycine max ethylene-responsive transcription factor CRF2-like (LOC100783772), mRNA ethylene-responsive transcription factor CRF2-like(LOC100783772) coding protein psRNATarget
XM_003534330.3
ncRNA:24   CGUUGCCCUUCCCAGCCCAGCCCA   1
  *=*||***||||||||||||||||
targets:628   UUUACAUAAAGGGUCGGGUCGGGU   651

3.0 PREDICTED: Glycine max equilibrative nucleotide transporter 1-like (LOC100802339), mRNA equilibrative nucleotide transporter 1-like(LOC100802339) coding protein psRNATarget