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BaseInfo

ncRNA ID novel_gma_miR9067
Species Glycine max
Class miRNA
Genome position Chr12:22805573-22805630 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 35 - ACAUCUGUGUGAAACGUUAUGACC - 58
Stem-loop(if miRNA) --   -     C  G     UU      CA
  UCG AGCGU UC AUAUA  AUGUCC  G
  ||| ||||| || |||||  ||||||  A
  AGU UUGCA AG UGUGU  UACAGG  A
CC   A     A  -     -C      CU
Stem-loop sequence UCGAGCGUCUCGAUAUAUUAUGUCCCAGAAUCGGACAUCUGUGUGAAACGUUAUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585004.2
ncRNA:24   CCAGUAUUGCAAAGUGUGUCUACA   1
  *||-=|=|=*||||||||||||||
targets:1056   UGU-GUGAUCUUUCACACAGAUGU   1078

3.0 PREDICTED: Glycine max protein BASIC PENTACYSTEINE2-like (LOC100791533), transcript variant X2, mRNA protein BASIC PENTACYSTEINE2-like(LOC100791533) coding protein psRNATarget
XM_006585003.2
ncRNA:24   CCAGUAUUGCAAAGUGUGUCUACA   1
  *||-=|=|=*||||||||||||||
targets:1109   UGU-GUGAUCUUUCACACAGAUGU   1131

3.0 PREDICTED: Glycine max protein BASIC PENTACYSTEINE2-like (LOC100791533), transcript variant X1, mRNA protein BASIC PENTACYSTEINE2-like(LOC100791533) coding protein psRNATarget
XM_014778792.1
ncRNA:24   CCAGUAUUGCAAAGUGUGUCUACA   1
  *||-=|=|=*||||||||||||||
targets:1183   UGU-GUGAUCUUUCACACAGAUGU   1205

3.0 PREDICTED: Glycine max protein BASIC PENTACYSTEINE2-like (LOC100791533), transcript variant X3, mRNA protein BASIC PENTACYSTEINE2-like(LOC100791533) coding protein psRNATarget