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BaseInfo

ncRNA ID	ath-miR843
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:17742098-17742302 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	50 - UUUAGGUCGAGCUUCAUUGGA - 70
Stem-loop(if miRNA)	AAUGCCCAACA      C       C      C    U    A UU                    U     CAA         CA       AUUACUAAA   A            ACUUCG GUUAUUU UGAAAA UUCA AUCU U  UCUUUUAGGUCGAGCUUCAU GGAAC   AUGGUGGCU  UCCAUCU         GCU U            |||||| ||||||| |||||| |||| |||| |  |||||||||||||||||||| |||||   |||||||||  |||||||         |||            UGAAGU CAAUAAA ACUUUU GAGU UAGA A  AGAAAAUCUAGCUCGAAGUG CCUUG   UACUACCGA  AGGUGGA         CGA A CACCUCUUACA      A       A      A    U    C UC                    U     UAC         AC       ---------   C
Stem-loop sequence	AAUGCCCAACAACUUCGCGUUAUUUCUGAAAACUUCAUAUCUAUUUUCUUUUAGGUCGAGCUUCAUUGGAACCAAAUGGUGGCUCAUCCAUCUAUUACUAAAGCUAUACAGCAGGUGGACAAGCCAUCAUCAUGUUCCUGUGAAGCUCGAUCUAAAAGACUACAGAUUUGAGAUUUUCAAAAAUAACAUGAAGUACAUUCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_112236.1	ncRNA:21   AGGUUACUUCGAGCUGGAUUU   1   |=||||||||||||||||||| targets:210   UUCAAUGAAGCUCGACCUAAA   230 Target Full Sequence	0.0	Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA	F-box and associated interaction domains-containing protein(AT3G13830)	coding protein	psRNATarget
BT015465.1	ncRNA:21   AGGUUACUUCGAGCUGGAUUU   1   |=||||||||||*|||||||| targets:144   UUCAAUGAAGCUGGACCUAAA   164 Target Full Sequence	1.5	Arabidopsis thaliana At1g11810 mRNA sequence	NA	coding protein	psRNATarget
BT029542.1	ncRNA:21   AGGUUACUUCGAGCUGGAUUU   1   |=||||||||||*|||||||| targets:198   UUCAAUGAAGCUGGACCUAAA   218 Target Full Sequence	1.5	Arabidopsis thaliana At1g11810 mRNA, complete cds	NA	coding protein	psRNATarget
NM_101053.3	ncRNA:21   AGGUUACUUCGAGCUGGAUUU   1   |=||||||||||*|||||||| targets:198   UUCAAUGAAGCUGGACCUAAA   218 Target Full Sequence	1.5	Arabidopsis thaliana F-box associated ubiquitination effector family protein partial mRNA	F-box associated ubiquitination effector family protein(AT1G11810)	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).
3	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).