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BaseInfo

ncRNA ID novel_gma_miR9025
Species Glycine max
Class miRNA
Genome position Chr8:4807380-4807436 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 19
Mature sequence(if miRNA) 39 - GACAUUGACUGUGCGCUAA - 57
Stem-loop(if miRNA) ---   A   AC        AAGCC   A
   GAC UUG  UGUGCGCU     UGC C
   ||| |||  ||||||||     |||
   UUG AAC  ACACGCGA     GCG A
AAC   A   GU        AAUAC   U
Stem-loop sequence GACAUUGACUGUGCGCUAAGCCUGCACAUGCGCAUAAAGCGCACAUGCAAAGUUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK244190.1
ncRNA:19   AAUCGCGUGUCAGUUACAG   1
  |||||*||||||||||||=
targets:1219   UUAGCACACAGUCAAUGUU   1237

2.0 Glycine max cDNA, clone: GMFL01-02-F12 NA coding protein psRNATarget
XM_006575574.2
ncRNA:19   AAUCGCGUGUCAGUUACAG   1
  ||=||*|||||||||||||
targets:1258   UUGGCACACAGUCAAUGUC   1276

2.0 PREDICTED: Glycine max transmembrane protein 56-B-like (LOC100815525), transcript variant X3, mRNA transmembrane protein 56-B-like(LOC100815525) coding protein psRNATarget
XM_014770390.1
ncRNA:19   AAUCGCGUGUCAGUUACAG   1
  ||=||*|||||||||||||
targets:1557   UUGGCACACAGUCAAUGUC   1575

2.0 PREDICTED: Glycine max transmembrane protein 56-B-like (LOC100815525), transcript variant X2, mRNA transmembrane protein 56-B-like(LOC100815525) coding protein psRNATarget
XM_003519483.3
ncRNA:19   AAUCGCGUGUCAGUUACAG   1
  ||=||*|||||||||||||
targets:1703   UUGGCACACAGUCAAUGUC   1721

2.0 PREDICTED: Glycine max transmembrane protein 56-B-like (LOC100815525), transcript variant X1, mRNA transmembrane protein 56-B-like(LOC100815525) coding protein psRNATarget