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BaseInfo

ncRNA ID novel_gma_miR9001
Species Glycine max
Class miRNA
Genome position Chr7:11865908-11866042 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 22
Mature sequence(if miRNA) 1 - UUUAAAAUCGAUGUUGUAAGUG - 22
Stem-loop(if miRNA) --UUU              -   UG    A        A                A     -----    A
     AAAAUCGAUGUUGU AAG  CUUA CAACAUCG UUUUCAAAUAACCGAU UUGAA     ACUA A
     |||||||||||||| |||  |||| |||||||| |||||||||||||||| |||||     ||||
     UUUUGGCUACAGCA UUC  GAAU GUUGUAGC AAAAGUUUAUUGGCUA AAUUU     UGAU U
UAAAC              A   GU    -        C                C     UAGUG    U
Stem-loop sequence UUUAAAAUCGAUGUUGUAAGUGCUUAACAACAUCGAUUUUCAAAUAACCGAUAUUGAAACUAAAUUUAGUGUGAUUUUAACAUCGGUUAUUUGAAAACCGAUGUUGUAAGUGCUUAACGACAUCGGUUUUCAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776578.1
ncRNA:22   GUGAAUGUUGUAGCUAAAAUUU   1
  ||=||||||=||||||||||||
targets:1717   CAUUUACAAUAUCGAUUUUAAA   1738

1.5 PREDICTED: Glycine max ankyrin repeat and SOCS box protein 7-like (LOC100786031), transcript variant X1, mRNA ankyrin repeat and SOCS box protein 7-like(LOC100786031) coding protein psRNATarget