Search result

BaseInfo

ncRNA ID	novel_gma_miR8996
Species	Glycine max
Class	miRNA
Genome position	Chr11:10002513-10002595 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	21
Mature sequence(if miRNA)	1 - UCUCAAAAGAGCUUAUGACUU - 21
Stem-loop(if miRNA)	--GC                 A   A    CUGAAA     G     UAUAAGCUCUUUUGAGA CUU UCUA      AUAUA A     ||||||||||||||||| ||| ||||      ||||| G     GUAUUCGAGAAAACUCU GGA AGAU      UAUAU U UUCA                 -   -    AUAAUC     A
Stem-loop sequence	GCUAUAAGCUCUUUUGAGAACUUAUCUACUGAAAAUAUAGAGUAUAUAUCUAAUAUAGAAGGUCUCAAAAGAGCUUAUGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774046.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   |||*||||||||||||||||| targets:592   AAGCCAUAAGCUCUUUUGAGA   612 Target Full Sequence	1.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X2, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774047.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   |||*||||||||||||||||| targets:771   AAGCCAUAAGCUCUUUUGAGA   791 Target Full Sequence	1.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X3, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774048.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   |||*||||||||||||||||| targets:790   AAGCCAUAAGCUCUUUUGAGA   810 Target Full Sequence	1.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X4, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774045.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   |||*||||||||||||||||| targets:868   AAGCCAUAAGCUCUUUUGAGA   888 Target Full Sequence	1.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X1, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
AK245413.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   *||||||=||||||||||||* targets:369   CAGUCAUGAGCUCUUUUGAGU   389 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-29-K23	NA	coding protein	psRNATarget
GQ917182.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   *||||||=||||||||||||* targets:406   CAGUCAUGAGCUCUUUUGAGU   426 Target Full Sequence	2.0	Glycine max cultivar Kefeng No.1 rubisco activase (RCA14) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001255602.1	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   *||||||=||||||||||||* targets:406   CAGUCAUGAGCUCUUUUGAGU   426 Target Full Sequence	2.0	Glycine max ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like (RCA14), mRNA	ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like(RCA14)	coding protein	psRNATarget
XM_003548130.3	ncRNA:21   UUCAGUAUUCGAGAAAACUCU   1   |**|||*|||||||||||||= targets:173   ACCUCAGAAGCUCUUUUGAGG   193 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100796283 (LOC100796283), mRNA	uncharacterized LOC100796283(LOC100796283)	coding protein	psRNATarget