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BaseInfo

ncRNA ID novel_gma_miR8974
Species Glycine max
Class miRNA
Genome position Chr7:44559397-44559563 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 22
Mature sequence(if miRNA) 1 - AGGGACUAAAAUGAAUAAGUUU - 22
Stem-loop(if miRNA) --      C              UAGUUAAUAU  AG          CCCUAAAA              C    --   AUUUCUGCCG
  AUUUAU CAUUUUAGUCCCUA          GU  AUUUUUUAGU        UUUACAUUUUAAUU UCAA  UAG          U
  |||||| ||||||||||||||          ||  ||||||||||        |||||||||||||| ||||  |||          U
  UGAAUA GUAAAAUCAGGGAU          CA  UAAAAAAUCA        AAAUGUAAAAUUAA AGUU  CAA          A
UU      A              ----------  CU          AGAACUUC              A    CU   UUUUUUUUAA
Stem-loop sequence AUUUAUCCAUUUUAGUCCCUAUAGUUAAUAUGUAGAUUUUUUAGUCCCUAAAAUUUACAUUUUAAUUCUCAAUAGAUUUCUGCCGUUAAAUUUUUUUUAACUCUUGAAAAUUAAAAUGUAAACUUCAAGAACUAAAAAAUUCACUAGGGACUAAAAUGAAUAAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK285576.1
ncRNA:22   UUUGAAUAAGUAAAAUCAGGGA   1
  *|*||*|||||||||||||||*
targets:1874   CAUCUCAUUCAUUUUAGUCCCC   1895

2.0 Glycine max cDNA, clone: GMFL01-12-O06 NA coding protein psRNATarget
XM_006594681.2
ncRNA:22   UUUGAAUAAGUAAAAUCAGGGA   1
  *|*||*|||||||||||||||*
targets:1937   CAUCUCAUUCAUUUUAGUCCCC   1958

2.0 PREDICTED: Glycine max uncharacterized LOC100799062 (LOC100799062), mRNA uncharacterized LOC100799062(LOC100799062) coding protein psRNATarget
XM_003540429.3
ncRNA:22   UUUGAAUAAGUAAAAUCAGGGA   1
  *|*||*|||||||||||||||*
targets:1887   CAUCUCAUUCAUUUUAGUCCCC   1908

2.0 PREDICTED: Glycine max uncharacterized LOC100800452 (LOC100800452), mRNA uncharacterized LOC100800452(LOC100800452) coding protein psRNATarget