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BaseInfo

ncRNA ID novel_gma_miR8971
Species Glycine max
Class miRNA
Genome position Chr7:35785124-35785273 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 130 - AUUAUACAUUAUAUUUAAGGC - 150
Stem-loop(if miRNA) --        C                     -        A        UCUUAAAUAAUAAA       U  -  U  UUA
  UUUAAAUA AAUGUAUGAUUUUAAUUAAAA UUAAUAUA AAUAAAAA              AGUAUUU UU AG AA   C
  |||||||| ||||||||||||||||||||| |||||||| ||||||||              ||||||| || || ||
  GAAUUUAU UUACAUAUUAAAAUUAAUUUU AAUUAUAU UUAUUUUU              UUAUAAA AA UC UU   A
CG        A                     U        A        --------------       C  C  U  UAC
Stem-loop sequence UUUAAAUACAAUGUAUGAUUUUAAUUAAAAUUAAUAUAAAAUAAAAAUCUUAAAUAAUAAAAGUAUUUUUUAGUAAUUACACAUUUUCUCAACAAAUAUUUUUUUAUUAUAUAUUAAUUUUUAAUUAAAAUUAUACAUUAUAUUUAAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003524919.3
ncRNA:21   CGGAAUUUAUAUUACAUAUUA   1
  **=|||||||||||*||||||
targets:1379   UAUUUAAAUAUAAUAUAUAAU   1399

2.5 PREDICTED: Glycine max uncharacterized LOC100792185 (LOC100792185), transcript variant X2, mRNA uncharacterized LOC100792185(LOC100792185) coding protein psRNATarget
XM_006580112.2
ncRNA:21   CGGAAUUUAUAUUACAUAUUA   1
  **=|||||||||||*||||||
targets:1557   UAUUUAAAUAUAAUAUAUAAU   1577

2.5 PREDICTED: Glycine max uncharacterized LOC100792185 (LOC100792185), transcript variant X1, mRNA uncharacterized LOC100792185(LOC100792185) coding protein psRNATarget