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BaseInfo

ncRNA ID novel_gma_miR8943
Species Glycine max
Class miRNA
Genome position Chr6:39772516-39772572 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 37 - AUCAACUUGAUCCGUAAGAGU - 57
Stem-loop(if miRNA) --                        CG
  UCUUAUGGAUCAAGUUGAUUCGUA  U
  ||||||||||||||||||||||||  G
  AGAAUGCCUAGUUCAACUAGGCAU  A
UG                        UC
Stem-loop sequence UCUUAUGGAUCAAGUUGAUUCGUACGUGACUUACGGAUCAACUUGAUCCGUAAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768353.1
ncRNA:21   UGAGAAUGCCUAGUUCAACUA   1
  |=|*|||=|||||||||||||
targets:562   AUUGUUAUGGAUCAAGUUGAU   582

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:21   UGAGAAUGCCUAGUUCAACUA   1
  |***|||||||||||||||||
targets:590   AGAAUUACGGAUCAAGUUGAU   610

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:21   UGAGAAUGCCUAGUUCAACUA   1
  ==|**||||||||||||||||
targets:1183   GUUGAUACGGAUCAAGUUGAU   1203

2.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_006593444.2
ncRNA:21   UGAGAAUGCCUAGUUCAACUA   1
  |**|*||||||||||||||||
targets:3672   AAGCAUACGGAUCAAGUUGAU   3692

2.0 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
XM_006600975.2
ncRNA:21   UGAGAAUGCCUAGUUCAACUA   1
  |**||||||||||||*|||||
targets:1247   AGCCUUACGGAUCAACUUGAU   1267

2.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget