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BaseInfo

ncRNA ID	novel_gma_miR8939
Species	Glycine max
Class	miRNA
Genome position	Chr11:8327744-8327945 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	24
Mature sequence(if miRNA)	179 - AAGGAUUAAAAGAAAAUUAAAAUA - 202
Stem-loop(if miRNA)	--      CUAC                 AAAA     AUAAAAAUAAUA     CAAAUUAGUUAUAAAUUAUCAACUAUUUUUUUAUUACAAAUUAUUUUUC   UUUUAA    CUUUUAGUCUUUACUGU    AAUAU            AACUA                                                 G   ||||||    |||||||||||||||||    |||||            |||||   AAAAUU    GAAAAUUAGGAAUGGUA    UUAUA            UAAUA                                                 A AU      AAAA                 -GUG     -----CUUAUUA     GUUAAUGUUAAUUAAUAUUUUUUAAUUGUUUAUUAAGCAUUAAUCAAAU
Stem-loop sequence	UUUUAACUACCUUUUAGUCUUUACUGUAAAAAAUAUAUAAAAAUAAUAAACUACAAAUUAGUUAUAAAUUAUCAACUAUUUUUUUAUUACAAAUUAUUUUUCGAUAAACUAAUUACGAAUUAUUUGUUAAUUUUUUAUAAUUAAUUGUAAUUGAUAAUAUUAUUCAUAUUGUGAUGGUAAGGAUUAAAAGAAAAUUAAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006592724.2	ncRNA:24   AUA---AAAUUAAAAGAAAAUUAGGAA   1   |||---|||*|||||*||||||||||| targets:132   UAUCUAUUUCAUUUUAUUUUAAUCCUU   158 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 1 (IQD1L), transcript variant X2, mRNA	protein IQ-DOMAIN 1(IQD1L)	coding protein	psRNATarget
XM_006592723.2	ncRNA:24   AUA---AAAUUAAAAGAAAAUUAGGAA   1   |||---|||*|||||*||||||||||| targets:131   UAUCUAUUUCAUUUUAUUUUAAUCCUU   157 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 1 (IQD1L), transcript variant X1, mRNA	protein IQ-DOMAIN 1(IQD1L)	coding protein	psRNATarget
XM_003540228.3	ncRNA:24   AUA---AAAUUAAAAGAAAAUUAGGAA   1   |||---|||*|||||*||||||||||| targets:130   UAUCUAUUUCAUUUUAUUUUAAUCCUU   156 Target Full Sequence	2.5	PREDICTED: Glycine max protein IQ-DOMAIN 1 (IQD1L), transcript variant X4, mRNA	protein IQ-DOMAIN 1(IQD1L)	coding protein	psRNATarget
AK286553.1	ncRNA:24   AUA---AAAUUAAAAGAAAAUUAGGAA   1   |||---|||*|||||*||||||||||| targets:10   UAUCUAUUUCAUUUUAUUUUAAUCCUU   36 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-31-C13	NA	coding protein	psRNATarget
XM_006593530.2	ncRNA:24   AUAAAAU-UAAAAGAAAAUUAGGAA   1   |=||*||-||||||||||||||||* targets:4298   UGUUAUACAUUUUCUUUUAAUCCUG   4322 Target Full Sequence	3.0	PREDICTED: Glycine max sister chromatid cohesion protein PDS5 homolog B-A (LOC100777822), transcript variant X1, mRNA	sister chromatid cohesion protein PDS5 homolog B-A(LOC100777822)	coding protein	psRNATarget
XM_006593531.2	ncRNA:24   AUAAAAU-UAAAAGAAAAUUAGGAA   1   |=||*||-||||||||||||||||* targets:4295   UGUUAUACAUUUUCUUUUAAUCCUG   4319 Target Full Sequence	3.0	PREDICTED: Glycine max sister chromatid cohesion protein PDS5 homolog B-A (LOC100777822), transcript variant X2, mRNA	sister chromatid cohesion protein PDS5 homolog B-A(LOC100777822)	coding protein	psRNATarget
XM_006593532.2	ncRNA:24   AUAAAAU-UAAAAGAAAAUUAGGAA   1   |=||*||-||||||||||||||||* targets:4277   UGUUAUACAUUUUCUUUUAAUCCUG   4301 Target Full Sequence	3.0	PREDICTED: Glycine max sister chromatid cohesion protein PDS5 homolog B-A (LOC100777822), transcript variant X3, mRNA	sister chromatid cohesion protein PDS5 homolog B-A(LOC100777822)	coding protein	psRNATarget
XM_014765347.1	ncRNA:24   AUAAAAU-UAAAAGAAAAUUAGGAA   1   |=||*||-||||||||||||||||* targets:4274   UGUUAUACAUUUUCUUUUAAUCCUG   4298 Target Full Sequence	3.0	PREDICTED: Glycine max sister chromatid cohesion protein PDS5 homolog B-A (LOC100777822), transcript variant X4, mRNA	sister chromatid cohesion protein PDS5 homolog B-A(LOC100777822)	coding protein	psRNATarget
XM_006593535.2	ncRNA:24   AUAAAAU-UAAAAGAAAAUUAGGAA   1   |=||*||-||||||||||||||||* targets:3926   UGUUAUACAUUUUCUUUUAAUCCUG   3950 Target Full Sequence	3.0	PREDICTED: Glycine max sister chromatid cohesion protein PDS5 homolog B-A (LOC100777822), transcript variant X8, mRNA	sister chromatid cohesion protein PDS5 homolog B-A(LOC100777822)	coding protein	psRNATarget