Search result

BaseInfo

ncRNA ID novel_gma_miR8934
Species Glycine max
Class miRNA
Genome position Chr6:22067232-22067308 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 19
Mature sequence(if miRNA) 59 - UAUAAAUAGGAAUGGAAGU - 77
Stem-loop(if miRNA) --C    C                  A      G    
   UCCG UCCUAUUUAUAAGAAACA GUUAUA UGUAA
   |||| |||||||||||||||||| |||||| ||||A
   AGGU AGGAUAAAUAUUCUUUGU CAAUAU ACAUA
UGA    A                  A      A    
Stem-loop sequence CUCCGCUCCUAUUUAUAAGAAACAAGUUAUAGUGUAAAAUACAAUAUAACAUGUUUCUUAUAAAUAGGAAUGGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550778.3
ncRNA:19   UGAAGGUAAGGAUAAAUAU   1
  |||*=||||||||||||||
targets:111   ACUCUCAUUCCUAUUUAUA   129

2.0 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 52B (LOC100791226), mRNA DEAD-box ATP-dependent RNA helicase 52B(LOC100791226) coding protein psRNATarget
BT094679.1
ncRNA:19   UGAAGGUAAGGAUAAAUAU   1
  =||||||||*|||||||||
targets:496   GCUUCCAUUGCUAUUUAUA   514

2.5 Soybean clone JCVI-FLGm-5P18 unknown mRNA NA coding protein psRNATarget
XM_014768875.1
ncRNA:19   UGAAGGUAAGGAUAAAUAU   1
  |||||||||||*||||||=
targets:2704   ACUUCCAUUCCAAUUUAUG   2722

2.5 PREDICTED: Glycine max uncharacterized LOC100795225 (LOC100795225), mRNA uncharacterized LOC100795225(LOC100795225) coding protein psRNATarget
XM_006583154.2
ncRNA:19   UGAAGGUAAGGAUAAAUAU   1
  |||||||||||*||||||=
targets:2692   ACUUCCAUUCCAAUUUAUG   2710

2.5 PREDICTED: Glycine max uncharacterized LOC100789935 (LOC100789935), transcript variant X1, mRNA uncharacterized LOC100789935(LOC100789935) coding protein psRNATarget