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BaseInfo

ncRNA ID novel_gma_miR8930
Species Glycine max
Class miRNA
Genome position Chr5:6015662-6015738 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 57 - UCCAUCAUCUUGAUUGUCAUC - 77
Stem-loop(if miRNA) --      A  U           AUU          C AU
  UCCAUC UC UGAUUGUCAUC   GCUACCACCA C  U
  |||||| || |||||||||||   |||||||||| |
  AGGUAG AG ACUAACAGUAG   CGAUGGUGGU G  G
GG      G  U           ---          A CU
Stem-loop sequence UCCAUCAUCUUGAUUGUCAUCAUUGCUACCACCACCAUUGUCGAUGGUGGUAGCGAUGACAAUCAUGAGGAUGGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006586517.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  **|||||||*|||||||||||
targets:10   UUUGACAAUGAAGAUGAUGGA   30

1.5 PREDICTED: Glycine max B3 domain-containing protein At2g33720-like (LOC102668312), mRNA B3 domain-containing protein At2g33720-like(LOC102668312) coding protein psRNATarget
BT094911.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:797   CAUAACAUUCAAGAUGAUGGA   817

2.0 Soybean clone JCVI-FLGm-19E23 unknown mRNA NA coding protein psRNATarget
XM_014771142.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1029   CAUAACAUUCAAGAUGAUGGA   1049

2.0 PREDICTED: Glycine max ELMO domain-containing protein A-like (LOC100812876), transcript variant X4, mRNA ELMO domain-containing protein A-like(LOC100812876) coding protein psRNATarget
XM_003552441.3
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1075   CAUAACAUUCAAGAUGAUGGA   1095

2.0 PREDICTED: Glycine max ELMO domain-containing protein A-like (LOC100812876), transcript variant X3, mRNA ELMO domain-containing protein A-like(LOC100812876) coding protein psRNATarget
XM_014771141.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1081   CAUAACAUUCAAGAUGAUGGA   1101

2.0 PREDICTED: Glycine max ELMO domain-containing protein A-like (LOC100812876), transcript variant X2, mRNA ELMO domain-containing protein A-like(LOC100812876) coding protein psRNATarget
XM_014762374.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1069   CAUAACAUUCAAGAUGAUGGA   1089

2.0 PREDICTED: Glycine max ELMO domain-containing protein A (LOC100808186), transcript variant X4, mRNA ELMO domain-containing protein A(LOC100808186) coding protein psRNATarget
XM_006587717.2
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1070   CAUAACAUUCAAGAUGAUGGA   1090

2.0 PREDICTED: Glycine max ELMO domain-containing protein A (LOC100808186), transcript variant X3, mRNA ELMO domain-containing protein A(LOC100808186) coding protein psRNATarget
XM_006602801.2
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1127   CAUAACAUUCAAGAUGAUGGA   1147

2.0 PREDICTED: Glycine max ELMO domain-containing protein A-like (LOC100812876), transcript variant X1, mRNA ELMO domain-containing protein A-like(LOC100812876) coding protein psRNATarget
XM_014762373.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1100   CAUAACAUUCAAGAUGAUGGA   1120

2.0 PREDICTED: Glycine max ELMO domain-containing protein A (LOC100808186), transcript variant X2, mRNA ELMO domain-containing protein A(LOC100808186) coding protein psRNATarget
XM_003534427.3
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  *||*|||*|||||||||||||
targets:1114   CAUAACAUUCAAGAUGAUGGA   1134

2.0 PREDICTED: Glycine max ELMO domain-containing protein A (LOC100808186), transcript variant X1, mRNA ELMO domain-containing protein A(LOC100808186) coding protein psRNATarget
NM_001248637.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  **|||=|||*|||||||||||
targets:108   ACUGAUAAUGAAGAUGAUGGA   128

2.5 Glycine max uncharacterized LOC100499754 (LOC100499754), mRNA uncharacterized LOC100499754(LOC100499754) coding protein psRNATarget
BT089415.1
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  **|||=|||*|||||||||||
targets:108   ACUGAUAAUGAAGAUGAUGGA   128

2.5 Soybean clone JCVI-FLGm-1L22 unknown mRNA NA coding protein psRNATarget
XM_003524944.3
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  **|||=|||*|||||||||||
targets:193   ACUGAUAAUGAAGAUGAUGGA   213

2.5 PREDICTED: Glycine max nuclear transcription factor Y subunit A-7-like (LOC100805791), transcript variant X2, mRNA nuclear transcription factor Y subunit A-7-like(LOC100805791) coding protein psRNATarget
XM_006580149.2
ncRNA:21   CUACUGUUAGUUCUACUACCU   1
  **|||=|||*|||||||||||
targets:384   ACUGAUAAUGAAGAUGAUGGA   404

2.5 PREDICTED: Glycine max nuclear transcription factor Y subunit A-7-like (LOC100805791), transcript variant X1, mRNA nuclear transcription factor Y subunit A-7-like(LOC100805791) coding protein psRNATarget
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