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BaseInfo

ncRNA ID novel_gma_miR8923
Species Glycine max
Class miRNA
Genome position Chr5:20667166-20667301 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 116 - CUCAUGAGAACCGUAGGGCCU - 136
Stem-loop(if miRNA) --            G   GG C             CUA  C    AUUCU   -      - UA     U
  CUCAUGAGAACC UAG  C UUCUCUUGCAUCU   GC CAAU     UUG AGUCUU C  CCCAA G
  |||||||||||| |||  | |||||||||||||   || ||||     ||| |||||| |  ||||| C
  GAGUACUCUUGG AUC  G AAGAGAACGUAGA   CG GUUA     AAC UUAGGA G  GGGUU U
CC            G   -A U             AAC  A    --GAC   G      U GG     C
Stem-loop sequence CUCAUGAGAACCGUAGGGCCUUCUCUUGCAUCUCUAGCCCAAUAUUCUUUGAGUCUUCUACCCAAUGCUCUUGGGGGGUAGGAUUGCAACAGAUUGAGCCAAAGAUGCAAGAGAAUGACUAGGGUUCUCAUGAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006603972.2
ncRNA:21   UCCGGGAUGCCAAGAGUACUC   1
  ||||||||*||||||||||||
targets:1307   AGGCCCUAAGGUUCUCAUGAG   1327

1.5 PREDICTED: Glycine max CLIP-associated protein-like (LOC100802218), transcript variant X1, mRNA CLIP-associated protein-like(LOC100802218) coding protein psRNATarget
XM_014772498.1
ncRNA:21   UCCGGGAUGCCAAGAGUACUC   1
  ||||||||*||||||||||||
targets:2666   AGGCCCUAGGGUUCUCAUGAG   2686

1.5 PREDICTED: Glycine max vacuolar protein-sorting-associated protein 37 homolog 2-like (LOC100801006), partial mRNA vacuolar protein-sorting-associated protein 37 homolog 2-like(LOC100801006) coding protein psRNATarget