Search result

BaseInfo

ncRNA ID novel_gma_miR8916
Species Glycine max
Class miRNA
Genome position Chr5:34751728-34751813 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 66 - UUAAAAAGUGUAUGUGUAAGG - 86
Stem-loop(if miRNA) --                     U      AUC   AUG   U
  UUACACAUACACUUUUUAAUC GUUUUA   CCU   AUU U
  ||||||||||||||||||||| ||||||   |||   |||
  AAUGUGUAUGUGAAAAAUUAG CAAAAU   GGA   UAA U
GG                     U      CAA   CCA   G
Stem-loop sequence UUACACAUACACUUUUUAAUCUGUUUUAAUCCCUAUGAUUUUUGAAUACCAGGAACUAAAACUGAUUAAAAAGUGUAUGUGUAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK286737.1
ncRNA:21   GGAAUGUGUAUGUGAAAAAUU   1
  |=|||=|||||||||*|||||
targets:1093   CUUUAUACAUACACUCUUUAA   1113

2.5 Glycine max cDNA, clone: GMFL01-35-L17 NA coding protein psRNATarget
XM_006599236.2
ncRNA:21   GGAAUGUGUAUGUGAAAAAUU   1
  |**|||||||||||*||||||
targets:467   CGAUACACAUACACAUUUUAA   487

2.5 PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA uncharacterized LOC100788736(LOC100788736) coding protein psRNATarget
XM_003521103.3
ncRNA:21   GGAAUGUGUAUGUGAAAAAUU   1
  ****|||=|||||||||||||
targets:387   GGACACAUAUACACUUUUUAA   407

3.0 PREDICTED: Glycine max triacylglycerol lipase SDP1-like (LOC100791261), mRNA triacylglycerol lipase SDP1-like(LOC100791261) coding protein psRNATarget