Search result

BaseInfo

ncRNA ID	novel_gma_miR8900
Species	Glycine max
Class	miRNA
Genome position	Chr4:17697970-17698055 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	23
Mature sequence(if miRNA)	64 - GAGGAUAAAAGAAAGUAGAAAUC - 86
Stem-loop(if miRNA)	--      A    AA  -       ---C   -      -   UUC   GAGGAU AAAG  AG UAGAAAU    AAC AAAGUG AGA   A   |||||| ||||  || |||||||    ||| |||||| |||   UUUUUA UUUC  UC AUUUUUA    UUG UUUCAC UCU   C UU      A    AC  U       AAUU   A      A   UUA
Stem-loop sequence	GAGGAUAAAAGAAAGUAGAAAUCAACAAAGUGAGAUUCACAUUUCUACACUUUAGUUUUAAAUUUUUAUCUCACUUUAAUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014764806.1	ncRNA:23   CUAAAGAUGAAAGAAAAUAGGAG   1   ***|||||=|||||||*|||||| targets:863   CCCUUCUAUUUUCUUUCAUCCUC   885 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100787051 (LOC100787051), mRNA	uncharacterized LOC100787051(LOC100787051)	coding protein	psRNATarget
XM_006592616.2	ncRNA:23   CUAAAGAUGAAAGAAAAUAGGAG   1   |*|||=|*=|||||||||||||| targets:477   GCUUUUUUUUUUCUUUUAUCCUC   499 Target Full Sequence	3.0	PREDICTED: Glycine max auxin response factor 4-like (LOC100812909), transcript variant X1, mRNA	auxin response factor 4-like(LOC100812909)	coding protein	psRNATarget
XM_006592617.2	ncRNA:23   CUAAAGAUGAAAGAAAAUAGGAG   1   |*|||=|*=|||||||||||||| targets:477   GCUUUUUUUUUUCUUUUAUCCUC   499 Target Full Sequence	3.0	PREDICTED: Glycine max auxin response factor 4-like (LOC100812909), transcript variant X2, mRNA	auxin response factor 4-like(LOC100812909)	coding protein	psRNATarget
XM_003540118.3	ncRNA:23   CUAAAGAUGAAAGAAAAUAGGAG   1   |*|||=|*=|||||||||||||| targets:477   GCUUUUUUUUUUCUUUUAUCCUC   499 Target Full Sequence	3.0	PREDICTED: Glycine max auxin response factor 4-like (LOC100812909), transcript variant X3, mRNA	auxin response factor 4-like(LOC100812909)	coding protein	psRNATarget
XM_006592619.2	ncRNA:23   CUAAAGAUGAAAGAAAAUAGGAG   1   |*|||=|*=|||||||||||||| targets:476   GCUUUUUUUUUUCUUUUAUCCUC   498 Target Full Sequence	3.0	PREDICTED: Glycine max auxin response factor 4-like (LOC100812909), transcript variant X4, mRNA	auxin response factor 4-like(LOC100812909)	coding protein	psRNATarget