Search result

BaseInfo

ncRNA ID	novel_gma_miR8893
Species	Glycine max
Class	miRNA
Genome position	Chr4:35068249-35068315 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	22
Mature sequence(if miRNA)	46 - CAUUAAAAGUAGCACUUACCCC - 67
Stem-loop(if miRNA)	--C     AA           -----------C   UAU    AUUAA  GUAGCACUUAC            CCA   U    |||||  |||||||||||            |||    UAGUU  UAUUGUGGAUG            GGU   C UCC     AC           UUUUAACUAAAC   CCU
Stem-loop sequence	CAUUAAAAGUAGCACUUACCCCAUAUUCUCCUGGCAAAUCAAUUUUGUAGGUGUUAUCAUUGAUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT095329.1	ncRNA:22   CCCCAUUCACGAUGAAAAUUAC   1   ***|||*|||||||||||=||| targets:292   UCUGUAUGUGCUACUUUUGAUG   313 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-7M17 unknown mRNA	NA	coding protein	psRNATarget
XM_006574040.1	ncRNA:22   CCCCAUUCACGAUGAAAAUUAC   1   ****||||||||||*||||||| targets:343   AACAUAAGUGCUACCUUUAAUG   364 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102664315 (LOC102664315), mRNA	uncharacterized LOC102664315(LOC102664315)	coding protein	psRNATarget
XM_006587142.2	ncRNA:22   CCCCAUUCACGAUGAAAAUUAC   1   ***||||*||||||||*||||| targets:526   AUUGUAAAUGCUACUUCUAAUG   547 Target Full Sequence	2.5	PREDICTED: Glycine max probable L-type lectin-domain containing receptor kinase S.5 (LOC100788762), mRNA	probable L-type lectin-domain containing receptor kinase S.5(LOC100788762)	coding protein	psRNATarget
XM_014775206.1	ncRNA:22   CCCCAUUCACGAUGAAAAUUAC   1   |**|*||||||||*|||||||| targets:2506   GCUGCAAGUGCUAAUUUUAAUG   2527 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100794785 (LOC100794785), mRNA	uncharacterized LOC100794785(LOC100794785)	coding protein	psRNATarget
XM_006589860.1	ncRNA:22   CCCCAUUCACGAUGAAAAUUAC   1   **||*||*|||||||||||||* targets:55   CUGGCAACUGCUACUUUUAAUA   76 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC102667168 (LOC102667168), mRNA	uncharacterized LOC102667168(LOC102667168)	coding protein	psRNATarget