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BaseInfo

ncRNA ID novel_gma_miR8888
Species Glycine max
Class miRNA
Genome position Chr4:38368382-38368424 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 23 - UGGUCUGAAGCUUGUACUUGG - 43
Stem-loop(if miRNA) --    C    G     A  UG
  UGGU UGAA CUUGU CU  G
  |||| |||| ||||| ||
  ACCA AUUU GAACA GA  U
GU    U    A     -  UU
Stem-loop sequence UGGUCUGAAGCUUGUACUUGGUUUAGACAAGAUUUAUACCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287003.1
ncRNA:21   GGUUCAUGUUCGAAGUCUGGU   1
  =*||||*|||||||||||||*
targets:1604   UGAAGUCCAAGCUUCAGACCC   1624

2.0 Glycine max cDNA, clone: GMFL01-41-P16 NA coding protein psRNATarget
XM_003534226.3
ncRNA:21   GGUUCAUGUUCGAAGUCUGGU   1
  =*||||*|||||||||||||*
targets:1785   UGAAGUCCAAGCUUCAGACCC   1805

2.0 PREDICTED: Glycine max transcription factor MYC2-like (LOC100790168), mRNA transcription factor MYC2-like(LOC100790168) coding protein psRNATarget
XM_014774895.1
ncRNA:21   GGUUCAUGUUCGAAGUCUGGU   1
  |*||*|||||||||=||||||
targets:1324   CAAAAUACAAGCUUUAGACCA   1344

2.5 PREDICTED: Glycine max uncharacterized protein sll1770-like (LOC100801705), transcript variant X2, mRNA uncharacterized protein sll1770-like(LOC100801705) coding protein psRNATarget
XM_006578758.1
ncRNA:21   GGUUCAUGUUCGAAGUCUGGU   1
  |*||*|||||||||=||||||
targets:1324   CAAAAUACAAGCUUUAGACCA   1344

2.5 PREDICTED: Glycine max uncharacterized protein sll1770-like (LOC100801705), transcript variant X1, mRNA uncharacterized protein sll1770-like(LOC100801705) coding protein psRNATarget