Search result

BaseInfo

ncRNA ID	novel_gma_miR8881
Species	Glycine max
Class	miRNA
Genome position	Chr4:41496978-41497081 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	24
Mature sequence(if miRNA)	1 - GAAGGAAAUGGAACAUCUUUGACA - 24
Stem-loop(if miRNA)	--          G   A    U     A           G           G   GAAGGAAAUG AAC UCUU GACAC CGCGGAAGAAG UUCUUCUGUGG A   |||||||||| ||| |||| ||||| ||||||||||| |||||||||||   CUUCCUUUAC UUG AGGA CUGUG GCGCCUUCUUC AAGAAGGCACC A CU          A   C    U     G           G           C
Stem-loop sequence	GAAGGAAAUGGAACAUCUUUGACACACGCGGAAGAAGGUUCUUCUGUGGGAACCCACGGAAGAAGCUUCUUCCGCGGGUGUCUAGGACGUUACAUUUCCUUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763386.1	ncRNA:24   ACAGUUUCUACAAGGUAAAGGAAG   1   ||--|=|||||||||||||||||| targets:2488   UG--AGAGAUGUUCCAUUUCCUUC   2509 Target Full Sequence	1.0	PREDICTED: Glycine max putative receptor-like protein kinase At4g00960 (LOC100791056), mRNA	putative receptor-like protein kinase At4g00960(LOC100791056)	coding protein	psRNATarget
XM_014776429.1	ncRNA:24   ACAGUUUCUACAAGGUAAAGGAAG   1   **|**|||||||||||||||*||| targets:928   ACUAUAAGAUGUUCCAUUUCAUUC   951 Target Full Sequence	1.5	PREDICTED: Glycine max hydroxyacylglutathione hydrolase cytoplasmic (LOC100785138), partial mRNA	hydroxyacylglutathione hydrolase cytoplasmic(LOC100785138)	coding protein	psRNATarget
XM_003551214.3	ncRNA:24   ACA-GUUUCUACAAGGUAAAGGAAG   1   |||-||=*||*|||||||||||||| targets:14   UGUUCAGUGAAGUUCCAUUUCCUUC   38 Target Full Sequence	3.0	PREDICTED: Glycine max PHD finger-like domain-containing protein 5B (LOC100777021), transcript variant X1, mRNA	PHD finger-like domain-containing protein 5B(LOC100777021)	coding protein	psRNATarget