Search result

BaseInfo

ncRNA ID	novel_gma_miR8880
Species	Glycine max
Class	miRNA
Genome position	Chr4:41064134-41064206 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	23
Mature sequence(if miRNA)	51 - UUCGCUUAGCAGAACUGCGCGCU - 73
Stem-loop(if miRNA)	UGAAA     ---C            ----A       G      CGCAG    GCUAAGCGAGCC     GAGAGAC U      |||||    ||||||||||||     ||||||| U      GCGUC    CGAUUCGCUUGG     CUCUUUG U -UCGC     AAGA            AGAAA       G
Stem-loop sequence	UGAAACGCAGCGCUAAGCGAGCCAGAGAGACGUUUGGUUUCUCAAAGAGGUUCGCUUAGCAGAACUGCGCGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK285936.1	ncRNA:23   UCGCGCGUCAAGACGAUUCGCUU   1   |||*|*||||||||||||*|||| targets:387   AGCACCCAGUUCUGCUAACCGAA   409 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-18-N20	NA	coding protein	psRNATarget
XM_006592137.2	ncRNA:23   UCGCGCGUCAAGACGAUUCGCUU   1   |||*|*||||||||||||*|||| targets:439   AGCACCCAGUUCUGCUAACCGAA   461 Target Full Sequence	2.5	PREDICTED: Glycine max actin (LOC100813437), transcript variant X1, mRNA	actin(LOC100813437)	coding protein	psRNATarget
XM_003539627.3	ncRNA:23   UCGCGCGUCAAGACGAUUCGCUU   1   |||*|*||||||||||||*|||| targets:457   AGCACCCAGUUCUGCUAACCGAA   479 Target Full Sequence	2.5	PREDICTED: Glycine max actin (LOC100813437), transcript variant X2, mRNA	actin(LOC100813437)	coding protein	psRNATarget