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BaseInfo

ncRNA ID novel_gma_miR8879
Species Glycine max
Class miRNA
Genome position Chr4:39722125-39722171 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 1 - CUUCUAGUAAUCGAUUACUGC - 21
Stem-loop(if miRNA) --C    A              C
   UUCU GUAAUCGAUUACUG C
   |||| |||||||||||||| U
   AAGA CAUUAGCUAAUGAU U
UGA    C              C
Stem-loop sequence CUUCUAGUAAUCGAUUACUGCCUUCUAGUAAUCGAUUACCAGAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001253983.2
ncRNA:21   CGUCAUUAGCUAAUGAUCUUC   1
  |*||||*||||||||*|||||
targets:503   GAAGUACUCGAUUACCAGAAG   523

2.5 Glycine max uncharacterized LOC100808577 (LOC100808577), mRNA uncharacterized LOC100808577(LOC100808577) coding protein psRNATarget
NM_001249472.2
ncRNA:21   CGUCAUUAGCUAAUGAUCUUC   1
  |*||||*||||||||*|||||
targets:538   GAAGUACUCGAUUACCAGAAG   558

2.5 Glycine max uncharacterized LOC100526950 (LOC100526950), mRNA uncharacterized LOC100526950(LOC100526950) coding protein psRNATarget
BT091754.1
ncRNA:21   CGUCAUUAGCUAAUGAUCUUC   1
  |*||||*||||||||*|||||
targets:541   GAAGUACUCGAUUACCAGAAG   561

2.5 Soybean clone JCVI-FLGm-8B10 unknown mRNA NA coding protein psRNATarget