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BaseInfo

ncRNA ID novel_gma_miR8871
Species Glycine max
Class miRNA
Genome position Chr12:31773111-31773188 [-]
Reference genome Glycine_max_v2.0
Source SRR1294477
Length 24
Mature sequence(if miRNA) 1 - UAGUUGCUGGAGUGGACUUGGGCC - 24
Stem-loop(if miRNA) --  UG C   -    UUA      C     -U   C  GG
  CU  A UCC CUUU   UAACUG UAGAG  GGA UU  G
  ||  | ||| ||||   |||||| |||||  ||| ||
  GG  U AGG GAGG   GUUGAU AUCUU  CCU AG  U
CC  GU C   U    -UC      -     UC   U  UU
Stem-loop sequence CUUGACUCCCUUUUUAUAACUGCUAGAGUGGACUUGGGUUUGAUUCCCUUUCUAUAGUUGCUGGAGUGGACUUGGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771299.1
ncRNA:24   CCGGGUUCAGGUGAGGUCGUUGAU   1
  **|=|||*||||||=|||||||||
targets:5236   AACUCAACUCCACUUCAGCAACUA   5259

2.5 PREDICTED: Glycine max uncharacterized LOC102669491 (LOC102669491), transcript variant X2, mRNA uncharacterized LOC102669491(LOC102669491) coding protein psRNATarget
XM_014771298.1
ncRNA:24   CCGGGUUCAGGUGAGGUCGUUGAU   1
  **|=|||*||||||=|||||||||
targets:4819   AACUCAACUCCACUUCAGCAACUA   4842

2.5 PREDICTED: Glycine max uncharacterized LOC102669491 (LOC102669491), transcript variant X1, mRNA uncharacterized LOC102669491(LOC102669491) coding protein psRNATarget
XM_014771300.1
ncRNA:24   CCGGGUUCAGGUGAGGUCGUUGAU   1
  **|=|||*||||||=|||||||||
targets:4266   AACUCAACUCCACUUCAGCAACUA   4289

2.5 PREDICTED: Glycine max uncharacterized LOC102669491 (LOC102669491), transcript variant X3, mRNA uncharacterized LOC102669491(LOC102669491) coding protein psRNATarget