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BaseInfo

ncRNA ID	novel_gma_miR8853
Species	Glycine max
Class	miRNA
Genome position	Chr3:30246967-30247063 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	23
Mature sequence(if miRNA)	75 - UUGUUGGUGUUGUUGUUAUCAUC - 97
Stem-loop(if miRNA)	UU     U   G           -   --UUC  C    UCCU      U   GUUGG GUU UUGUUAUCAUC AUC     CU UUCA    CAUGAC C   ||||| ||| ||||||||||| |||     || ||||    ||||||   UAGCU CGA AACAAUAGUAG UAG     GA GAGU    GUACUG A -G     -   A           G   UAAUA  U    UUAC      U
Stem-loop sequence	UUGUUGGUGUUGUUGUUAUCAUCAUCUUCCUCUUCAUCCUCAUGACUCAUGUCAUGCAUUUGAGUAGAUAAUGAUGGAUGAUAACAAAAGCUCGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003522459.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |*||*|||||||||||||||||| targets:211   GCUGCUAACAACAACACCAACAA   233 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox protein knotted-1-like 3 (LOC100790048), transcript variant X2, mRNA	homeobox protein knotted-1-like 3(LOC100790048)	coding protein	psRNATarget
XM_006578064.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |*||*|||||||||||||||||| targets:518   GCUGCUAACAACAACACCAACAA   540 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox protein knotted-1-like 3 (LOC100790048), transcript variant X1, mRNA	homeobox protein knotted-1-like 3(LOC100790048)	coding protein	psRNATarget
XM_003545924.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||||||||||||*|||||| targets:5985   GAUGAUAACAACAACAACAACAA   6007 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g04780-like (LOC100788530), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g04780-like(LOC100788530)	coding protein	psRNATarget
XM_014768364.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||||||||||||*|||||| targets:5641   GAUGAUAACAACAACAACAACAA   5663 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g04780-like (LOC100788530), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g04780-like(LOC100788530)	coding protein	psRNATarget
XM_003541675.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *|||||||||||||||*|||||| targets:758   AAUGAUAACAACAACAACAACAA   780 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100777465 (LOC100777465), transcript variant X1, mRNA	uncharacterized LOC100777465(LOC100777465)	coding protein	psRNATarget
XM_006600836.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   **||||||||||||||*|||||| targets:85   UUUGAUAACAACAACAACAACAA   107 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor bHLH25-like (LOC100785572), mRNA	transcription factor bHLH25-like(LOC100785572)	coding protein	psRNATarget
XM_003530841.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *|*|||||||||||||*|||||| targets:536   AACGAUAACAACAACAACAACAA   558 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100793299 (LOC100793299), mRNA	uncharacterized LOC100793299(LOC100793299)	coding protein	psRNATarget
XM_006572877.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:326   AAUAAUAACAACAACAACAACAA   348 Target Full Sequence	1.5	PREDICTED: Glycine max probable RNA-dependent RNA polymerase 5 (LOC100801632), mRNA	probable RNA-dependent RNA polymerase 5(LOC100801632)	coding protein	psRNATarget
XM_006591256.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ****||||||||||||=|||||| targets:851   CCACAUAACAACAACAUCAACAA   873 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100813413), transcript variant X1, mRNA	transcription repressor KAN1-like(LOC100813413)	coding protein	psRNATarget
XM_006591258.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ****||||||||||||=|||||| targets:851   CCACAUAACAACAACAUCAACAA   873 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100813413), transcript variant X3, mRNA	transcription repressor KAN1-like(LOC100813413)	coding protein	psRNATarget
XM_006591257.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ****||||||||||||=|||||| targets:849   CCACAUAACAACAACAUCAACAA   871 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100813413), transcript variant X2, mRNA	transcription repressor KAN1-like(LOC100813413)	coding protein	psRNATarget
XM_014764205.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ****||||||||||||=|||||| targets:849   CCACAUAACAACAACAUCAACAA   871 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100813413), transcript variant X4, mRNA	transcription repressor KAN1-like(LOC100813413)	coding protein	psRNATarget
XM_006583766.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:1026   AAUAAUAACAACAACAACAACAA   1048 Target Full Sequence	1.5	PREDICTED: Glycine max dof zinc finger protein DOF1.4 (LOC778101), transcript variant X1, mRNA	dof zinc finger protein DOF1.4(LOC778101)	coding protein	psRNATarget
XM_003529290.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:942   AAUAAUAACAACAACAACAACAA   964 Target Full Sequence	1.5	PREDICTED: Glycine max dof zinc finger protein DOF1.4 (LOC778101), transcript variant X2, mRNA	dof zinc finger protein DOF1.4(LOC778101)	coding protein	psRNATarget
XM_003549261.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:805   CAUCAUAACAACAACAACAACAA   827 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger protein 3-like (LOC100820461), mRNA	zinc finger protein 3-like(LOC100820461)	coding protein	psRNATarget
XM_006596846.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:723   CAUCAUAACAACAACAACAACAA   745 Target Full Sequence	1.5	PREDICTED: Glycine max exocyst complex component EXO70B1-like (LOC102668225), mRNA	exocyst complex component EXO70B1-like(LOC102668225)	coding protein	psRNATarget
XM_003518649.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:760   AAUAAUAACAACAACAACAACAA   782 Target Full Sequence	1.5	PREDICTED: Glycine max gibberellin 2-beta-dioxygenase 2-like (LOC100809097), mRNA	gibberellin 2-beta-dioxygenase 2-like(LOC100809097)	coding protein	psRNATarget
BT094220.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||*||||||||||||*|||||| targets:609   CAUCAUAACAACAACAACAACAA   631 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-14D13 unknown mRNA	NA	coding protein	psRNATarget
BT098800.1	ncRNA:23   CUACUA-UUGUUGUUGUGGUUGUU   1   ||-|||-||||||||||||||||| targets:442   GA-GAUCAACAACAACACCAACAA   464 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-13C13 unknown mRNA	NA	coding protein	psRNATarget
NM_001252937.2	ncRNA:23   CUACUA-UUGUUGUUGUGGUUGUU   1   ||-|||-||||||||||||||||| targets:440   GA-GAUCAACAACAACACCAACAA   462 Target Full Sequence	2.0	Glycine max B2 protein-like (LOC100775724), mRNA	B2 protein-like(LOC100775724)	coding protein	psRNATarget
XM_003554341.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |||*|*||=|||||||||||||| targets:177   GAUCAAAAUAACAACACCAACAA   199 Target Full Sequence	2.0	PREDICTED: Glycine max ABC transporter B family member 1 (LOC100814667), mRNA	ABC transporter B family member 1(LOC100814667)	coding protein	psRNATarget
XM_006576488.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *|||||=|||||||||=|||||| targets:1024   AAUGAUGACAACAACAUCAACAA   1046 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667149 (LOC102667149), mRNA	uncharacterized LOC102667149(LOC102667149)	coding protein	psRNATarget
XM_014775566.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:562   GAUGAUGACAACAACAACAACAA   584 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:561   GAUGAUGACAACAACAACAACAA   583 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:561   GAUGAUGACAACAACAACAACAA   583 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_006579822.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:560   GAUGAUGACAACAACAACAACAA   582 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003526288.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:439   GAUGAUGACAACAACAACAACAA   461 Target Full Sequence	2.5	PREDICTED: Glycine max probable WRKY transcription factor 31 (LOC100795177), mRNA	probable WRKY transcription factor 31(LOC100795177)	coding protein	psRNATarget
XM_003552334.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||=|||||||||*|||||| targets:1234   GAUGAUGACAACAACAACAACAA   1256 Target Full Sequence	2.5	PREDICTED: Glycine max transcription repressor MYB6 (LOC100800408), mRNA	transcription repressor MYB6(LOC100800408)	coding protein	psRNATarget
XM_003536574.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||||||||=|||||||*|||||| targets:528   GAUGAUAAUAACAACAACAACAA   550 Target Full Sequence	2.5	PREDICTED: Glycine max cyclin-D3-1-like (LOC100782569), mRNA	cyclin-D3-1-like(LOC100782569)	coding protein	psRNATarget
XM_006587362.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||||=||||||||*|||||| targets:1209   AAUGAUAGCAACAACAACAACAA   1231 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100784504), transcript variant X2, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100784504)	coding protein	psRNATarget
XM_003534045.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||||=||||||||*|||||| targets:1208   AAUGAUAGCAACAACAACAACAA   1230 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100784504), transcript variant X1, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC100784504)	coding protein	psRNATarget
XM_006606055.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |||||*||||||||||*|||||| targets:1016   GAUGACAACAACAACAACAACAA   1038 Target Full Sequence	2.5	PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC102659731), transcript variant X1, mRNA	tripeptidyl-peptidase 2-like(LOC102659731)	coding protein	psRNATarget
XM_003522459.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   **|||*||||||||||*|||||| targets:181   ACUGACAACAACAACAACAACAA   203 Target Full Sequence	2.5	PREDICTED: Glycine max homeobox protein knotted-1-like 3 (LOC100790048), transcript variant X2, mRNA	homeobox protein knotted-1-like 3(LOC100790048)	coding protein	psRNATarget
XM_006606056.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |||||*||||||||||*|||||| targets:1017   GAUGACAACAACAACAACAACAA   1039 Target Full Sequence	2.5	PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC102659731), transcript variant X2, mRNA	tripeptidyl-peptidase 2-like(LOC102659731)	coding protein	psRNATarget
XM_006578064.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   **|||*||||||||||*|||||| targets:488   ACUGACAACAACAACAACAACAA   510 Target Full Sequence	2.5	PREDICTED: Glycine max homeobox protein knotted-1-like 3 (LOC100790048), transcript variant X1, mRNA	homeobox protein knotted-1-like 3(LOC100790048)	coding protein	psRNATarget
XM_014773065.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   |||||*||||||||||*|||||| targets:1017   GAUGACAACAACAACAACAACAA   1039 Target Full Sequence	2.5	PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC102659731), transcript variant X4, mRNA	tripeptidyl-peptidase 2-like(LOC102659731)	coding protein	psRNATarget
XM_003533594.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *|||||||||*|||||||||||* targets:1658   CAUGAUAACACCAACACCAACAC   1680 Target Full Sequence	2.5	PREDICTED: Glycine max protein SCARECROW-like (LOC100803919), mRNA	protein SCARECROW-like(LOC100803919)	coding protein	psRNATarget
XM_003518319.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||*|||=|||||||||*|||||| targets:1197   GACGAUGACAACAACAACAACAA   1219 Target Full Sequence	2.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796325), transcript variant X1, mRNA	transcription repressor KAN1-like(LOC100796325)	coding protein	psRNATarget
XM_014769530.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   ||*|||=|||||||||*|||||| targets:1301   GACGAUGACAACAACAACAACAA   1323 Target Full Sequence	2.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796325), transcript variant X2, mRNA	transcription repressor KAN1-like(LOC100796325)	coding protein	psRNATarget
XM_014769530.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *|***|||||||||||*|||||| targets:300   UAGCUUAACAACAACAACAACAA   322 Target Full Sequence	2.5	PREDICTED: Glycine max transcription repressor KAN1-like (LOC100796325), transcript variant X2, mRNA	transcription repressor KAN1-like(LOC100796325)	coding protein	psRNATarget
XM_003519893.3	ncRNA:23   CUA---CUAUUGUUGUUGUGGUUGUU   1   |||---|||=|||||||||*|||||| targets:357   GAUCACGAUGACAACAACAACAACAA   382 Target Full Sequence	2.5	PREDICTED: Glycine max INO80 complex subunit D-like (LOC100782023), mRNA	INO80 complex subunit D-like(LOC100782023)	coding protein	psRNATarget
XM_003518115.3	ncRNA:23   CUA---CUAUUGUUGUUGUGGUUGUU   1   |||---|||=|||||||||*|||||| targets:351   GAUCACGAUGACAACAACAACAACAA   376 Target Full Sequence	2.5	PREDICTED: Glycine max INO80 complex subunit D-like (LOC100785208), mRNA	INO80 complex subunit D-like(LOC100785208)	coding protein	psRNATarget
XM_006600763.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||*||||||||||*|||||| targets:1510   UAUGAAAACAACAACAACAACAA   1532 Target Full Sequence	2.5	PREDICTED: Glycine max NAC domain-containing protein 7-like (LOC100797916), mRNA	NAC domain-containing protein 7-like(LOC100797916)	coding protein	psRNATarget
XM_003528529.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||*||||||||||*|||||| targets:938   AAUGAAAACAACAACAGCAACAA   960 Target Full Sequence	2.5	PREDICTED: Glycine max protein ODORANT1-like (LOC100809025), mRNA	protein ODORANT1-like(LOC100809025)	coding protein	psRNATarget
XM_003541272.3	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||*||||||||||*|||||| targets:236   CAUGAGAACAACAACAGCAACAA   258 Target Full Sequence	2.5	PREDICTED: Glycine max mannose-6-phosphate isomerase 1 (LOC100792369), mRNA	mannose-6-phosphate isomerase 1(LOC100792369)	coding protein	psRNATarget
BT094243.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||*||||||||||*|||||| targets:158   CAUGAGAACAACAACAGCAACAA   180 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-18K12 unknown mRNA	NA	coding protein	psRNATarget
BT097127.1	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||||*||||||||*|||||| targets:617   AAUGAUAUCAACAACAACAACAA   639 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-21J21 unknown mRNA	NA	coding protein	psRNATarget
NM_001255548.2	ncRNA:23   CUACUAUUGUUGUUGUGGUUGUU   1   *||||||*||||||||*|||||| targets:615   AAUGAUAUCAACAACAACAACAA   637 Target Full Sequence	2.5	Glycine max myb-related protein 308-like (LOC100808083), mRNA	myb-related protein 308-like(LOC100808083)	coding protein	psRNATarget