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BaseInfo

ncRNA ID novel_gma_miR8844
Species Glycine max
Class miRNA
Genome position Chr3:38891195-38891404 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 187 - UUUAUUUUAUAAUGUAAUUGGCUC - 210
Stem-loop(if miRNA) --A                                       C          C                 A         AAUUCGUA   - UUAUAUCAAAAU
   CCAAUUACGUUAUAAAAUAAAUAAUGUUGUUAUGCAUAA ACUAAAAUUU UAAUGUAUAUUUAAUGC CAUGUAAAU        UGA U            U
   ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||        ||| |            A
   GGUUAAUGUAAUAUUUUAUUUAUUACAACAAUAUGUAUU UGAUUUUAAA AUUACGUAUAAAUUACG GUACAUUUA        UUA U            A
CUC                                       A          A                 C         --AAUUUA   U UAAAAGACUGUU
Stem-loop sequence ACCAAUUACGUUAUAAAAUAAAUAAUGUUGUUAUGCAUAACACUAAAAUUUCUAAUGUAUAUUUAAUGCACAUGUAAAUAAUUCGUAUGAUUUAUAUCAAAAUUAAUUGUCAGAAAAUUUAUUAUUUAAAUUUACAUGCGCAUUAAAUAUGCAUUAAAAAUUUUAGUAUUAUGUAUAACAACAUUAUUUAUUUUAUAAUGUAAUUGGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576676.2
ncRNA:24   CUCGGUUAAUGUAAUAUUUUAUUU   1
  ***||||*||||||||*|||||||
targets:1669   ACUCCAAAUACAUUAUUAAAUAAA   1692

2.5 PREDICTED: Glycine max hydroquinone glucosyltransferase-like (LOC100807516), mRNA hydroquinone glucosyltransferase-like(LOC100807516) coding protein psRNATarget
NM_001252861.2
ncRNA:24   CUCGGUUA-AUGUAAUAUUUUAUUU   1
  *|**==||-||||||||||||||||
targets:1059   UAUAUGAUAUACAUUAUAAAAUAAA   1083

3.0 Glycine max endochitinase PR4-like (LOC100778526), mRNA endochitinase PR4-like(LOC100778526) coding protein psRNATarget
BT093432.1
ncRNA:24   CUCGGUUA-AUGUAAUAUUUUAUUU   1
  *|**==||-||||||||||||||||
targets:1061   UAUAUGAUAUACAUUAUAAAAUAAA   1085

3.0 Soybean clone JCVI-FLGm-14I7 unknown mRNA NA coding protein psRNATarget