ncRNA ID | novel_gma_miR8844 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr3:38891195-38891404 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451621 |
Length | 24 |
Mature sequence(if miRNA) | 187 - UUUAUUUUAUAAUGUAAUUGGCUC - 210 |
Stem-loop(if miRNA) |
--A                                       C          C                 A         AAUUCGUA   - UUAUAUCAAAAU    CCAAUUACGUUAUAAAAUAAAUAAUGUUGUUAUGCAUAA ACUAAAAUUU UAAUGUAUAUUUAAUGC CAUGUAAAU        UGA U            U    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||        ||| |            A    GGUUAAUGUAAUAUUUUAUUUAUUACAACAAUAUGUAUU UGAUUUUAAA AUUACGUAUAAAUUACG GUACAUUUA        UUA U            A CUC                                       A          A                 C         --AAUUUA   U UAAAAGACUGUU |
Stem-loop sequence | ACCAAUUACGUUAUAAAAUAAAUAAUGUUGUUAUGCAUAACACUAAAAUUUCUAAUGUAUAUUUAAUGCACAUGUAAAUAAUUCGUAUGAUUUAUAUCAAAAUUAAUUGUCAGAAAAUUUAUUAUUUAAAUUUACAUGCGCAUUAAAUAUGCAUUAAAAAUUUUAGUAUUAUGUAUAACAACAUUAUUUAUUUUAUAAUGUAAUUGGCUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006576676.2 |
|
2.5 | PREDICTED: Glycine max hydroquinone glucosyltransferase-like (LOC100807516), mRNA | hydroquinone glucosyltransferase-like(LOC100807516) | coding protein | psRNATarget | |||||||||
NM_001252861.2 |
|
3.0 | Glycine max endochitinase PR4-like (LOC100778526), mRNA | endochitinase PR4-like(LOC100778526) | coding protein | psRNATarget | |||||||||
BT093432.1 |
|
3.0 | Soybean clone JCVI-FLGm-14I7 unknown mRNA | NA | coding protein | psRNATarget |