Search result

BaseInfo

ncRNA ID novel_gma_miR8833
Species Glycine max
Class miRNA
Genome position Chr3:16994953-16995109 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 134 - AAGUUAAAGGACCAAAAUGAAAUU - 157
Stem-loop(if miRNA) --A         -        A   C     U           UUU         GUUUAUCAAUUGCUG   AA  U      U  A
   UUCAUUUUG UCCUUUAA UUU AAAUU GAGUCAUUUUG   UUUUUUUGU               CAA  UG AAAAUA UA C
   ||||||||| |||||||| ||| ||||| |||||||||||   |||||||||               |||  || |||||| ||
   AAGUAAAAC AGGAAAUU AAA UUUAA CUCAGUAAAAC   AGGAAAACA               GUU  AC UUUUAU AU A
UUA         C        G   A     U           --C         ---------------   GA  -      U  A
Stem-loop sequence AUUCAUUUUGUCCUUUAAAUUUCAAAUUUGAGUCAUUUUGUUUUUUUUUUGUGUUUAUCAAUUGCUGCAAAAUGUAAAAUAUUAACAAUAUUAUUUUCAAGUUGACAAAAGGACCAAAAUGACUCUAAUUUAAAAGUUAAAGGACCAAAAUGAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765354.1
ncRNA:24   UUAAAGUAAAACCAGGAAAUUGAA   1
  |*||||||||*|*|||||||||||
targets:3151   AUUUUCAUUUAGUUCCUUUAACUU   3174

2.5 PREDICTED: Glycine max ATP-dependent DNA helicase pfh1-like (LOC102659864), mRNA ATP-dependent DNA helicase pfh1-like(LOC102659864) coding protein psRNATarget