Search result

BaseInfo

ncRNA ID	novel_gma_miR8821
Species	Glycine max
Class	miRNA
Genome position	Chr2:36785855-36786061 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	21
Mature sequence(if miRNA)	187 - CAUUUAUUAGAGGUUGCACUA - 207
Stem-loop(if miRNA)	--C              G        C             C              G     CAA             C     A          -             AUUUAUUAGAGGUU CACUAGAA GAUCAGCACCAAU UGUGCUUCUUCCUC UCUAC   CUCAAUAUCUUUC UUUCA CUUUUGUUUU GUAAAUUACA    |||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||   ||||||||||||| ||||| |||||||||| |||||||||G    UAAAUAAUCUCCAA GUGAUCUU UUAGUCGUGGUUA ACACGGAGAAGGAG AGAUG   GAGUUAUAGAAAG AAAGU GGAAACGAAA CAUUUGAUGU AUC              A        C             A              G     CUC             C     -          A
Stem-loop sequence	CAUUUAUUAGAGGUUGCACUAGAACGAUCAGCACCAAUCUGUGCUUCUUCCUCGUCUACCAACUCAAUAUCUUUCCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUCGUAGAGGAGGAAGAGGCACAAAUUGGUGCUGAUUCUUCUAGUGAAACCUCUAAUAAAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006591670.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:105   UAGUGCAACCUCUAAUAAAUC   125 Target Full Sequence	1.0	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_006586135.2	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014764387.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||=|||||* targets:694   UAGUGCAACCUCUAGUAAAUC   714 Target Full Sequence	2.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 4-like (LOC100812737), mRNA	SNF2 domain-containing protein CLASSY 4-like(LOC100812737)	coding protein	psRNATarget