ncRNA ID | novel_gma_miR8796 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr20:3521337-3521470 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451621 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUCUGUUGAACUUGAAGCACC - 21 |
Stem-loop(if miRNA) |
---UGAA     G         -----CAG   AA   UA    ---      --------------------U        A        CAGGU UCAACAGGA        AGA  AUG  GUCA   GAGCCU                     AUUUGUAU A        ||||| |||||||||        |||  |||  ||||   ||||||                     ||||||||        GUUCA AGUUGUCUU        UCU  UAU  UAGU   UUCGGA                     UAGAUAUA U CCACGAA     -         AUAAACAA   --   UC    AUU      UUUUUUAAUUUCUUCAACCUU        U |
Stem-loop sequence | UGAACAGGUGUCAACAGGACAGAGAAAAUGUAGUCAGAGCCUUAUUUGUAUAAUUAUAUAGAUUUCCAACUUCUUUAAUUUUUUAGGCUUUUAUGAUCUUAUUCUAACAAAUAUUCUGUUGAACUUGAAGCACC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001255258.2 |
|
2.5 | Glycine max nitrilase homolog 1-like (LOC100781131), mRNA | nitrilase homolog 1-like(LOC100781131) | coding protein | psRNATarget | |||||||||
BT098854.1 |
|
2.5 | Soybean clone JCVI-FLGm-13K11 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_003555583.3 |
|
2.5 | PREDICTED: Glycine max nitrilase-like protein 2 (LOC100804890), mRNA | nitrilase-like protein 2(LOC100804890) | coding protein | psRNATarget |