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BaseInfo

ncRNA ID novel_gma_miR8796
Species Glycine max
Class miRNA
Genome position Chr20:3521337-3521470 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 1 - UUCUGUUGAACUUGAAGCACC - 21
Stem-loop(if miRNA) ---UGAA     G         -----CAG   AA   UA    ---      --------------------U        A
       CAGGU UCAACAGGA        AGA  AUG  GUCA   GAGCCU                     AUUUGUAU A
       ||||| |||||||||        |||  |||  ||||   ||||||                     ||||||||
       GUUCA AGUUGUCUU        UCU  UAU  UAGU   UUCGGA                     UAGAUAUA U
CCACGAA     -         AUAAACAA   --   UC    AUU      UUUUUUAAUUUCUUCAACCUU        U
Stem-loop sequence UGAACAGGUGUCAACAGGACAGAGAAAAUGUAGUCAGAGCCUUAUUUGUAUAAUUAUAUAGAUUUCCAACUUCUUUAAUUUUUUAGGCUUUUAUGAUCUUAUUCUAACAAAUAUUCUGUUGAACUUGAAGCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001255258.2
ncRNA:21   CCACGAAGUUCAAGUUGUCUU   1
  *|||||*|||||||*||||||
targets:1084   UGUGCUGCAAGUUCCACAGAA   1104

2.5 Glycine max nitrilase homolog 1-like (LOC100781131), mRNA nitrilase homolog 1-like(LOC100781131) coding protein psRNATarget
BT098854.1
ncRNA:21   CCACGAAGUUCAAGUUGUCUU   1
  *|||||*|||||||*||||||
targets:1086   UGUGCUGCAAGUUCCACAGAA   1106

2.5 Soybean clone JCVI-FLGm-13K11 unknown mRNA NA coding protein psRNATarget
XM_003555583.3
ncRNA:21   CCACGAAGUUCAAGUUGUCUU   1
  *|||||*|||||||*||||||
targets:1175   UGUGCUGCAAGUUCCACAGAA   1195

2.5 PREDICTED: Glycine max nitrilase-like protein 2 (LOC100804890), mRNA nitrilase-like protein 2(LOC100804890) coding protein psRNATarget