Search result

BaseInfo

ncRNA ID	novel_gma_miR8764
Species	Glycine max
Class	miRNA
Genome position	Chr19:7574250-7574457 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	21
Mature sequence(if miRNA)	188 - CAUUUAUUAGAGGUUGCACUA - 208
Stem-loop(if miRNA)	--C       A      G        C     A         U     C                            C     A  UUC     --     U       AUUUAUU GAGGUU CACUAGAA GAUCA CACCAAUCU UGCUU UUCCUCCUCUACCAGCUCAAUAUCUUUC UUUCA CU   GUUUU  GUAAA UACA    ||||||| |||||| |||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||   |||||  ||||| |||G    UAAAUAA CUCCAG GUGAUCUU UUAGU GUGGUUAGG ACGGA AAGGAGGAGAUGGUCGAGUUAUAGAAAG AAAGU GG   CGAAA  CAUUU AUGU AUC       C      G        C     C         C     C                            C     -  UAA     AU     C
Stem-loop sequence	CAUUUAUUAGAGGUUGCACUAGAACGAUCAACACCAAUCUUUGCUUCUUCCUCCUCUACCAGCUCAAUAUCUUUCCUUUCAACUUUCGUUUUGUAAAUUACAGUGUACUUUACUAAAAGCAAUGGUGAAACGAAAGAUAUUGAGCUGGUAGAGGAGGAACAGGCACGGAUUGGUGCUGAUUCUUCUAGUGGGACCUCCAAUAAAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006591670.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:105   UAGUGCAACCUCUAAUAAAUC   125 Target Full Sequence	1.0	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_006586135.2	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014764387.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||=|||||* targets:694   UAGUGCAACCUCUAGUAAAUC   714 Target Full Sequence	2.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 4-like (LOC100812737), mRNA	SNF2 domain-containing protein CLASSY 4-like(LOC100812737)	coding protein	psRNATarget