Search result

BaseInfo

ncRNA ID	novel_gma_miR8709
Species	Glycine max
Class	miRNA
Genome position	Chr18:39570766-39570973 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	21
Mature sequence(if miRNA)	188 - CAUUUAUUAGAGGUUGCACUA - 208
Stem-loop(if miRNA)	--CAU     A               -C     A               C      G        GU         U C  UCA   U       -               UUAUU GAGGUUGCACUAGAA  GAUCA CACCAAUCUGUGCUU UUCCUC UCUACCAG  CAAUAUCUU C UU   ACU UUGUUUU GUAAAUUACA      ||||| |||||||||||||||  ||||| ||||||||||||||| |||||| ||||||||  ||||||||| | ||   ||| ||||||| |||||||||G      AAUAA CUCCAGCGUGAUCUU  UUAGU GUGGUUAGGCACGAA AAGGAG AGAUGGUC  GUUAUAGAA G AA   UGG AACGAAA CAUUUGAUGU NNNCU     C               CU     C               C      G        AU         C C  -UG   U       A
Stem-loop sequence	CAUUUAUUAGAGGUUGCACUAGAACGAUCAACACCAAUCUGUGCUUCUUCCUCGUCUACCAGGUCAAUAUCUUUCCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAUGGUGUAACGCAAGAUAUUGUACUGGUAGAGGAGGAACAAGCACGGAUUGGUGCUGAUUUCUUCUAGUGCGACCUCCAAUAAUCNNN

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006591670.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:105   UAGUGCAACCUCUAAUAAAUC   125 Target Full Sequence	1.0	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_006586135.2	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||||||||* targets:849   UAGUGCAACCUCUAAUAAAUC   869 Target Full Sequence	1.0	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014764387.1	ncRNA:21   AUCACGUUGGAGAUUAUUUAC   1   ||||||||||||||=|||||* targets:694   UAGUGCAACCUCUAGUAAAUC   714 Target Full Sequence	2.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 4-like (LOC100812737), mRNA	SNF2 domain-containing protein CLASSY 4-like(LOC100812737)	coding protein	psRNATarget