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BaseInfo

ncRNA ID novel_gma_miR8700
Species Glycine max
Class miRNA
Genome position Chr18:6843889-6844043 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 132 - AAGGACUAAAAAGAUAUUUAAGCC - 155
Stem-loop(if miRNA) -C         A           CG   UUU   GCU     GC               AUU       UUU      UAG
  UUUAAAUAU UUUUUGGUCCU  CAA   AGU   UUUUU  UUUUAGUCCUUGCAA   AUGUUUG   UGUUUU   U
  ||||||||| |||||||||||  |||   |||   |||||  |||||||||||||||   |||||||   ||||||
  GAAUUUAUA AAAAAUCAGGA  GUU   UUA   AAAAG  AAAAUCAGGAACGUU   UAUAGAU   ACGAAA   C
CC         G           AG   ---   -AU     -A               ---       UUC      UUC
Stem-loop sequence CUUUAAAUAUAUUUUUGGUCCUCGCAAUUUAGUGCUUUUUUGCUUUUAGUCCUUGCAAAUUAUGUUUGUUUUGUUUUUAGUCCUUAAAGCACUUUAGAUAUUUGCAAGGACUAAAAAGAAAAUAAUUUUGGAAGGACUAAAAAGAUAUUUAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006596239.2
ncRNA:24   CCGAAUUUAUAGAAAAAUCAGGAA   1
  ||---|=||||||||||=||||||
targets:2550   GG---AGAUAUCUUUUUGGUCCUU   2570

2.5 PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100784797), mRNA uncharacterized protein At1g04910-like(LOC100784797) coding protein psRNATarget