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BaseInfo

ncRNA ID novel_gma_miR8695
Species Glycine max
Class miRNA
Genome position Chr18:49323574-49323746 [+]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 1 - UAUAAUAUUGUUAUGGAGAUUGAA - 24
Stem-loop(if miRNA) -UA         -      G   -----GA      GU   -AA    AAU  GAUAA      A   A    UAAA     G UG      UG
   UAAUAUUGU UAUGGA AUU       AUAUAA  GCA   GUUG   GU     AUUGUG GAU CACA    UAUAA A  GUUGAU  U
   ||||||||| |||||| |||       ||||||  |||   ||||   ||     |||||| ||| ||||    ||||| |  ||||||
   AUUGUAACG GUAUUU UAA       UAUAUU  UGU   CAGC   CA     UAAUAU UUA GUGU    GUGUU U  UAAUUA  G
UAA         C      G   AAAGAGC      --   AAC    --C  ----A      A   A    -CGA     G GU      CA
Stem-loop sequence UAUAAUAUUGUUAUGGAGAUUGAAUAUAAGUGCAAAGUUGAAUGUGAUAAAUUGUGAGAUACACAUAAAUAUAAGAUGGUUGAUUGUGACAUUAAUUGUGUUGUGAGCUGUGAAUUAUAUAAUAACCCGACCAAUGUUUAUAUCGAGAAAAAUGUUUAUGCGCAAUGUUAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006605499.2
ncRNA:24   AAGUUAGAGGUAUUGUUAUAAUAU   1
  ***|||||||||*||||||||||=
targets:2578   AAGAAUCUCCAUCACAAUAUUAUG   2601

2.5 PREDICTED: Glycine max phosphate transporter PHO1 homolog 3-like (LOC100805979), mRNA phosphate transporter PHO1 homolog 3-like(LOC100805979) coding protein psRNATarget
XM_014771283.1
ncRNA:24   AAGUUAGAGGUAUUGUUAUAAUAU   1
  *|||||**|*||||||||||||||
targets:1935   AUCAAUGGCAAUAACAAUAUUAUA   1958

3.0 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) coding protein psRNATarget
XM_014771284.1
ncRNA:24   AAGUUAGAGGUAUUGUUAUAAUAU   1
  *|||||**|*||||||||||||||
targets:1999   AUCAAUGGCAAUAACAAUAUUAUA   2022

3.0 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) coding protein psRNATarget