ncRNA ID | novel_gma_miR8695 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:49323574-49323746 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451621 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UAUAAUAUUGUUAUGGAGAUUGAA - 24 |
Stem-loop(if miRNA) |
-UA         -      G   -----GA      GU   -AA    AAU  GAUAA      A   A    UAAA     G UG      UG    UAAUAUUGU UAUGGA AUU       AUAUAA  GCA   GUUG   GU     AUUGUG GAU CACA    UAUAA A  GUUGAU  U    ||||||||| |||||| |||       ||||||  |||   ||||   ||     |||||| ||| ||||    ||||| |  ||||||    AUUGUAACG GUAUUU UAA       UAUAUU  UGU   CAGC   CA     UAAUAU UUA GUGU    GUGUU U  UAAUUA  G UAA         C      G   AAAGAGC      --   AAC    --C  ----A      A   A    -CGA     G GU      CA |
Stem-loop sequence | UAUAAUAUUGUUAUGGAGAUUGAAUAUAAGUGCAAAGUUGAAUGUGAUAAAUUGUGAGAUACACAUAAAUAUAAGAUGGUUGAUUGUGACAUUAAUUGUGUUGUGAGCUGUGAAUUAUAUAAUAACCCGACCAAUGUUUAUAUCGAGAAAAAUGUUUAUGCGCAAUGUUAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006605499.2 |
|
2.5 | PREDICTED: Glycine max phosphate transporter PHO1 homolog 3-like (LOC100805979), mRNA | phosphate transporter PHO1 homolog 3-like(LOC100805979) | coding protein | psRNATarget | |||||||||
XM_014771283.1 |
|
3.0 | PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X1, mRNA | protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) | coding protein | psRNATarget | |||||||||
XM_014771284.1 |
|
3.0 | PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X2, mRNA | protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) | coding protein | psRNATarget |