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BaseInfo

ncRNA ID novel_gma_miR8687
Species Glycine max
Class miRNA
Genome position Chr1:11586591-11586677 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 21
Mature sequence(if miRNA) 1 - UCACAUCAUCACUUAACUGAC - 21
Stem-loop(if miRNA) --  A              UG  CCAUUUGAAUCACGGAUUCUA
  CA UUAAGUGAUGAUGU  UU                     U
  || ||||||||||||||  ||
  GU AAUUCACUACUACA  UG                     U
CA  C              -C  UGUAACAUUUAUUUAUAAAGG
Stem-loop sequence CAAUUAAGUGAUGAUGUUGUUCCAUUUGAAUCACGGAUUCUAUUGGAAAUAUUUAUUUACAAUGUGUCACAUCAUCACUUAACUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001254685.2
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  ||||*||||||||*|||||||
targets:187   GUCAUUUAAGUGAAGAUGUGA   207

2.5 Glycine max EID1-like F-box protein 2-like (LOC100775676), mRNA EID1-like F-box protein 2-like(LOC100775676) coding protein psRNATarget
BT097096.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  ||||*||||||||*|||||||
targets:189   GUCAUUUAAGUGAAGAUGUGA   209

2.5 Soybean clone JCVI-FLGm-26C7 unknown mRNA NA coding protein psRNATarget
NM_001254274.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  |*||*||||||||*|||||||
targets:172   GGCAUUUAAGUGAAGAUGUGA   192

2.5 Glycine max EID1-like F-box protein 2-like (LOC100812977), mRNA EID1-like F-box protein 2-like(LOC100812977) coding protein psRNATarget
BT095959.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  |*||*||||||||*|||||||
targets:172   GGCAUUUAAGUGAAGAUGUGA   192

2.5 Soybean clone JCVI-FLGm-20K9 unknown mRNA NA coding protein psRNATarget
XM_006584540.2
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  |*||*||||||||*|||||||
targets:410   GGCAUUUAAGUGAAGAUGUGA   430

2.5 PREDICTED: Glycine max EID1-like F-box protein 2-like (LOC100812977), transcript variant X2, mRNA EID1-like F-box protein 2-like(LOC100812977) coding protein psRNATarget
XM_006584539.2
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  |*||*||||||||*|||||||
targets:658   GGCAUUUAAGUGAAGAUGUGA   678

2.5 PREDICTED: Glycine max EID1-like F-box protein 2-like (LOC100812977), transcript variant X1, mRNA EID1-like F-box protein 2-like(LOC100812977) coding protein psRNATarget
XM_014778369.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  |*||*||||||||*|||||||
targets:661   GGCAUUUAAGUGAAGAUGUGA   681

2.5 PREDICTED: Glycine max EID1-like F-box protein 2-like (LOC100812977), transcript variant X3, mRNA EID1-like F-box protein 2-like(LOC100812977) coding protein psRNATarget
XM_006605587.2
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  **|||*|||*|||||||||||
targets:3375   UCCAGAUAAAUGAUGAUGUGA   3395

2.5 PREDICTED: Glycine max putative disease resistance RPP13-like protein 1 (LOC100807735), transcript variant X3, mRNA putative disease resistance RPP13-like protein 1(LOC100807735) coding protein psRNATarget
XM_006605586.2
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  **|||*|||*|||||||||||
targets:3841   UCCAGAUAAAUGAUGAUGUGA   3861

2.5 PREDICTED: Glycine max putative disease resistance RPP13-like protein 1 (LOC100807735), transcript variant X2, mRNA putative disease resistance RPP13-like protein 1(LOC100807735) coding protein psRNATarget
XM_003556785.3
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  **|||*|||*|||||||||||
targets:3840   UCCAGAUAAAUGAUGAUGUGA   3860

2.5 PREDICTED: Glycine max putative disease resistance RPP13-like protein 1 (LOC100807735), transcript variant X1, mRNA putative disease resistance RPP13-like protein 1(LOC100807735) coding protein psRNATarget
XM_014769644.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  *|||||**||||||||||||=
targets:700   AUCAGUCUAGUGAUGAUGUGG   720

3.0 PREDICTED: Glycine max zinc finger BED domain-containing protein DAYSLEEPER-like (LOC106796714), transcript variant X1, mRNA zinc finger BED domain-containing protein DAYSLEEPER-like(LOC106796714) coding protein psRNATarget
XM_014769645.1
ncRNA:21   CAGUCAAUUCACUACUACACU   1
  *|||||**||||||||||||=
targets:715   AUCAGUCUAGUGAUGAUGUGG   735

3.0 PREDICTED: Glycine max zinc finger BED domain-containing protein DAYSLEEPER-like (LOC106796714), transcript variant X2, mRNA zinc finger BED domain-containing protein DAYSLEEPER-like(LOC106796714) coding protein psRNATarget