Search result

BaseInfo

ncRNA ID	novel_gma_miR8671
Species	Glycine max
Class	miRNA
Genome position	Chr10:13514125-13514228 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	22
Mature sequence(if miRNA)	1 - UUAAUGAUUAGCUAAAGGGGAG - 22
Stem-loop(if miRNA)	--    A       GC      C      G    A C        --AUA  U   UUCC UUAGCUA  CAUUAG UAAUUU UAGA G UCUCUCAU     AC U   |||| |||||||  |||||| |||||| |||| | ||||||||     ||   GGGG AAUCGAU  GUAAUU AUUAAG AUCU C AGGGAGUA     UG C GA    A       UA      A      A    A A        GAAAA  U
Stem-loop sequence	UUCCAUUAGCUAGCCAUUAGCUAAUUUGUAGAAGCUCUCUCAUAUAACUUCUGUAAAAGAUGAGGGAACAUCUAAGAAUUAAUUAAUGAUUAGCUAAAGGGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763080.1	ncRNA:22   GAGGGGAAAUCGAUUAGUAAUU   1   |||||||||||||||||||||| targets:3564   CUCCCCUUUAGCUAAUCAUUAA   3585 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763076.1	ncRNA:22   GAGGGGAAAUCGAUUAGUAAUU   1   |||||||||||||||||||||| targets:3669   CUCCCCUUUAGCUAAUCAUUAA   3690 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763077.1	ncRNA:22   GAGGGGAAAUCGAUUAGUAAUU   1   |||||||||||||||||||||| targets:3800   CUCCCCUUUAGCUAAUCAUUAA   3821 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763079.1	ncRNA:22   GAGGGGAAAUCGAUUAGUAAUU   1   |||||||||||||||||||||| targets:3812   CUCCCCUUUAGCUAAUCAUUAA   3833 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763075.1	ncRNA:22   GAGGGGAAAUCGAUUAGUAAUU   1   |||||||||||||||||||||| targets:3901   CUCCCCUUUAGCUAAUCAUUAA   3922 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
AK245456.1	ncRNA:22   GA--GGGGAAAUCGAUUAGUAAUU   1   ||--=||||||=|||||||||||* targets:1262   CUACUCCCUUUGGCUAAUCAUUAU   1285 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-31-A05	NA	coding protein	psRNATarget