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BaseInfo

ncRNA ID	ath-miR5651
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:17178447-17178608 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	43 - UUGUGCGGUUCAAAUAGUAAC - 63
Stem-loop(if miRNA)	-----------U    C       A   GU    UUCAACUGCGGAUAAAGUGUUGUGCGGUUCAAAUAGUAACAAAAAUAUAUAC             GGCU CGAAUGG GAC  GCAG                                                    A             |||| ||||||| |||  ||||             CCGA GCUUACC CUG  CUUG                                                    U CCAUCACUAUAU    A       A   -G    GCAUGUCACGUCAUGCUAAGUUUAUCAUUGCUUUAAGAAAUGUAUAUAUACA
Stem-loop sequence	UGGCUCCGAAUGGAGACGUGCAGUUCAACUGCGGAUAAAGUGUUGUGCGGUUCAAAUAGUAACAAAAAUAUAUACAUACAUAUAUAUGUAAAGAAUUUCGUUACUAUUUGAAUCGUACUGCACUGUACGGUUCGGUCACCAUUCGAAGCCUAUAUCACUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_118292.4	ncRNA:21   CAAUGAUAAACUUGGCGUGUU   1   **||*|||||||||*|||||| targets:869   AAUAAUAUUUGAACGGCACAA   889 Target Full Sequence	2.5	Arabidopsis thaliana defensin-like protein mRNA	defensin-like protein(AT4G21720)	coding protein	psRNATarget
NM_001203861.2	ncRNA:21   CAAUGAUAAACUUGGCGUGUU   1   **||*|||||||||*|||||| targets:921   AAUAAUAUUUGAACGGCACAA   941 Target Full Sequence	2.5	Arabidopsis thaliana defensin-like protein mRNA	defensin-like protein(AT4G21720)	coding protein	psRNATarget
NM_001341509.1	ncRNA:21   CAAUGAUAAACUUGGCGUGUU   1   **||*|||||||||*|||||| targets:1078   AAUAAUAUUUGAACGGCACAA   1098 Target Full Sequence	2.5	Arabidopsis thaliana defensin-like protein mRNA	defensin-like protein(AT4G21720)	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).