Search result

BaseInfo

ncRNA ID	novel_gma_miR8628
Species	Glycine max
Class	miRNA
Genome position	Chr16:3910815-3910903 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	22
Mature sequence(if miRNA)	68 - UUGGAUAAGAAUUGAGAACAUG - 89
Stem-loop(if miRNA)	--U                         U      -   AAUAUU       UGGAUAAGAAUUGAGAACAUGCUUU GAAUUG GUG      UGGA    ||||||||||||||||||||||||| |||||| |||      |||U    ACCUAUUCUUAGCUCUUGUACGAAG CUUAAC CAC      ACCG CAU                         -      A   ------
Stem-loop sequence	UUGGAUAAGAAUUGAGAACAUGCUUUUGAAUUGGUGAAUAUUUGGAUGCCACACACAAUUCGAAGCAUGUUCUCGAUUCUUAUCCAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK244894.1	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   =||||*||||||||*||||||| targets:1436   UAUGUACUCAAUUCCUAUCCAA   1457 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-16-D03	NA	coding protein	psRNATarget
XM_003539234.3	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   =||||*|||||*|||||||||| targets:1487   UAUGUACUCAACUCUUAUCCAA   1508 Target Full Sequence	2.5	PREDICTED: Glycine max non-specific phospholipase C1-like (LOC100796378), mRNA	non-specific phospholipase C1-like(LOC100796378)	coding protein	psRNATarget
XM_003551238.3	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   =||||*||||||||*||||||| targets:1718   UAUGUACUCAAUUCCUAUCCAA   1739 Target Full Sequence	2.5	PREDICTED: Glycine max non-specific phospholipase C1 (LOC100813744), mRNA	non-specific phospholipase C1(LOC100813744)	coding protein	psRNATarget
BT096741.1	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   *=*|||=||||||||||||*|| targets:21   AGGGUUUUCAAUUCUUAUCAAA   42 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-21I19 unknown mRNA	NA	coding protein	psRNATarget
NM_001255347.2	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   *=*|||=||||||||||||*|| targets:213   AGGGUUUUCAAUUCUUAUCAAA   234 Target Full Sequence	2.5	Glycine max C4HC3-type ring finger domain-containing protein (LOC100782178), transcript variant 1, mRNA	uncharacterized LOC100782178(LOC100782178)	coding protein	psRNATarget
XM_014769308.1	ncRNA:22   GUACAAGAGUUAAGAAUAGGUU   1   *=*|||=||||||||||||*|| targets:235   AGGGUUUUCAAUUCUUAUCAAA   256 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100782178 (LOC100782178), transcript variant X3, mRNA	uncharacterized LOC100782178(LOC100782178)	coding protein	psRNATarget