Search result

BaseInfo

ncRNA ID	novel_gma_miR8626
Species	Glycine max
Class	miRNA
Genome position	Chr16:7578804-7578876 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	24
Mature sequence(if miRNA)	1 - UAUAACCGAUGUAGAAAAGUGACU - 24
Stem-loop(if miRNA)	--     CC      --         CU      UUCA   UAUAA  GAUGUA  GAAAAGUGA  UUUUAC    A   |||||  ||||||  |||||||||  ||||||   AUAUU  UUACAU  UUUUUCAUU  AAAAUG    U UA     UA      UU         -U      CAAU
Stem-loop sequence	UAUAACCGAUGUAGAAAAGUGACUUUUUACUUCAAUUAACGUAAAAUUUACUUUUUUUUACAUUAUUUAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT096450.1	ncRNA:24   UCAGUGAAAAGAUGUAGCCAAUAU   1   ***=*||||||||||||||||=|* targets:239   UUCUUCUUUUCUACAUCGGUUGUU   262 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-25J23 unknown mRNA	NA	coding protein	psRNATarget
AK245041.1	ncRNA:24   UCAGUGAAAAGAUGUAGCCAAUAU   1   ***=*||||||||||||||||=|* targets:235   UUCUUCUUUUCUACAUCGGUUGUU   258 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-19-K16	NA	coding protein	psRNATarget
XM_006581665.2	ncRNA:24   UCAGUGAAAAGAUGUAGCCAAUAU   1   ***=*||||||||||||||||=|* targets:298   UUCUUCUUUUCUACAUCGGUUGUU   321 Target Full Sequence	2.5	PREDICTED: Glycine max alpha-galactosidase 3 (LOC100784072), mRNA	alpha-galactosidase 3(LOC100784072)	coding protein	psRNATarget
XM_014763018.1	ncRNA:24   UCAGU-GAAAAGAUGUAGCCAAUAU   1   *|||=-|||*||||||||||||||| targets:12   UGUCGUCUUAUCUACAUCGGUUAUA   36 Target Full Sequence	3.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X4, mRNA	phosphoinositide phosphatase SAC1-like(LOC102660101)	coding protein	psRNATarget
XM_014763017.1	ncRNA:24   UCAGU-GAAAAGAUGUAGCCAAUAU   1   *|||=-|||*||||||||||||||| targets:12   UGUCGUCUUAUCUACAUCGGUUAUA   36 Target Full Sequence	3.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA	phosphoinositide phosphatase SAC1-like(LOC102660101)	coding protein	psRNATarget
XM_014767461.1	ncRNA:24   UCAGUGAAAAGAUGUAGCCAAUAU   1   |||-==*||||||||||||||||* targets:1861   AGU-GUCUUUCUACAUCGGUUAUC   1883 Target Full Sequence	3.0	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget