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BaseInfo

ncRNA ID novel_gma_miR8621
Species Glycine max
Class miRNA
Genome position Chr1:38126733-38126784 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 23
Mature sequence(if miRNA) 30 - UUUUUGUGUGCGUGCAGGAGACU - 52
Stem-loop(if miRNA) ----        UG GUG  G      U
    UUUUUGUG  C   CA GAGACU C
    ||||||||  |   || |||||| C
    AAAAAUAC  G   GU UUUUGG U
CGGA        GU ---  G      U
Stem-loop sequence UUUUUGUGUGCGUGCAGGAGACUUCCUUGGUUUUGUGGUGCAUAAAAAAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772668.1
ncRNA:23   UCAGAGGACGUGCGUGUGUUUUU   1
  |***|||||||*|||||||||||
targets:86   AUAAUCCUGCAAGCACACAAAAA   108

1.5 PREDICTED: Glycine max CENP-B homolog protein 2-like (LOC100814506), mRNA CENP-B homolog protein 2-like(LOC100814506) coding protein psRNATarget
XM_006605651.2
ncRNA:23   UCAGAGGACGUGCGUGUGUUUUU   1
  |***|||||||*|||||||||||
targets:94   AUAAUCCUGCAAGCACACAAAAA   116

1.5 PREDICTED: Glycine max CENP-B homolog protein 2-like (LOC102667284), mRNA CENP-B homolog protein 2-like(LOC102667284) coding protein psRNATarget
XM_006591412.2
ncRNA:23   UCAGAGGACGUGCGUGUGUUUUU   1
  **|*||=|*||||||||||||||
targets:1019   UAUAUCUUUCACGCACACAAAAA   1041

2.0 PREDICTED: Glycine max two-component response regulator ARR11 (LOC100797421), transcript variant X1, mRNA two-component response regulator ARR11(LOC100797421) coding protein psRNATarget