Search result

BaseInfo

ncRNA ID	novel_gma_miR8606
Species	Glycine max
Class	miRNA
Genome position	Chr18:8485356-8485431 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1294476
Length	19
Mature sequence(if miRNA)	58 - UCUCUCAAUGAAAGCACCA - 76
Stem-loop(if miRNA)	---- AUG    GG  A    UG  --    G  GG          G   UCAU  GA GAGA  GU  UUGC CU  CAUGGC     |   ||||  || ||||  ||  |||| ||  |||||A     C   AGUA  CU CUCU  UA  GACG GA  GUACCG ACCA GAA    -A  -    GU  CU    -  AG
Stem-loop sequence	GAUGUCAUGGGAAGAGAUGGUUUGCGCUGGCAUGGCAGCCAUGGAAGGCAGUCAUUGUCUCUCAAUGAAAGCACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014762858.1	ncRNA:19   ACCACGAAAGUAACUCUCU   1   ||||||||||||||||||* targets:71   UGGUGCUUUCAUUGAGAGC   89 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC106794943 (LOC106794943), mRNA	uncharacterized LOC106794943(LOC106794943)	coding protein	psRNATarget
XM_006603098.2	ncRNA:19   ACCACGAAAGUAACUCUCU   1   ||||||||||||||||||* targets:641   UGGUGCUUUCAUUGAGAGC   659 Target Full Sequence	1.0	PREDICTED: Glycine max ras-associated and pleckstrin homology domains-containing protein 1-like (LOC102666882), mRNA	ras-associated and pleckstrin homology domains-containing protein 1-like(LOC102666882)	coding protein	psRNATarget
XM_014775790.1	ncRNA:19   ACCACGAAAGUAACUCUCU   1   ||||*|||||||||||||* targets:251   UGGUACUUUCAUUGAGAGC   269 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC106798745 (LOC106798745), mRNA	uncharacterized LOC106798745(LOC106798745)	coding protein	psRNATarget
XM_003532372.3	ncRNA:19   ACCACGAAAGUAACUCUCU   1   *||||||||=||||||||| targets:573   AGGUGCUUUUAUUGAGAGA   591 Target Full Sequence	2.5	PREDICTED: Glycine max RING-H2 zinc finger protein RHA1a-like (LOC100817079), mRNA	RING-H2 zinc finger protein RHA1a-like(LOC100817079)	coding protein	psRNATarget
XM_003523162.3	ncRNA:19   ACCACGAAAGUAACUCUCU   1   *|*|||||||||||||||= targets:2701   AGAUGCUUUCAUUGAGAGG   2719 Target Full Sequence	3.0	PREDICTED: Glycine max probable glucan 1,3-alpha-glucosidase (LOC100817168), mRNA	probable glucan 1,3-alpha-glucosidase(LOC100817168)	coding protein	psRNATarget
AK285408.1	ncRNA:19   ACCACGAAAGUAACUCUCU   1   *|*|||||||||||||||= targets:2682   AGAUGCUUUCAUUGAGAGG   2700 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-08-P14	NA	coding protein	psRNATarget
XM_003533870.3	ncRNA:19   ACCACGAAAGUAACUCUCU   1   |*|*||||||||||||||= targets:626   UAGAGCUUUCAUUGAGAGG   644 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100779304 (LOC100779304), mRNA	uncharacterized LOC100779304(LOC100779304)	coding protein	psRNATarget